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View Structure Prediction Details

Protein: MRPL32
Organism: Saccharomyces cerevisiae
Length: 183 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL32.

Description E-value Query
Range
Subject
Range
gi|190406439 - gi|190406439|gb|EDV09706.1| 60S ribosomal protein L32, mitochondrial precursor [Saccharomyces cerevi...
RM32_YEAST - 54S ribosomal protein L32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
MRPL32 - Mitochondrial ribosomal protein of the large subunit
7.0E-72 [1..183] [1..183]
MRPL32 - mitochondrial ribosomal protein L32
2.0E-53 [16..179] [31..182]
RM32_MOUSE - 39S ribosomal protein L32, mitochondrial OS=Mus musculus GN=Mrpl32 PE=1 SV=1
6.0E-44 [23..179] [37..181]
gi|13235613 - gi|13235613|emb|CAC33586.1| hypothetical protein [Pichia pastoris]
3.0E-40 [44..180] [6..139]
mRpL32-PA - The gene mitochondrial ribosomal protein L32 is referred to in FlyBase by the symbol Dmel\mRpL32 (CG...
4.0E-39 [52..180] [36..169]
CE00100 - status:Confirmed UniProt:Q04907 protein_id:AAA27965.1
7.0E-32 [59..179] [40..158]
gi|16944545, gi|... - gi|32404322|ref|XP_322774.1| hypothetical protein ( (AL442043) related to ribosomal protein YmL32 pr...
gi|85076046 - gi|85076046|ref|XP_955872.1| hypothetical protein NCU03516 [Neurospora crassa OR74A]
2.0E-17 [59..125] [49..115]
RM32_SCHPO - Probable 54S ribosomal protein L32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...
mrpl32 - mitochondrial ribosomal protein subunit L32
8.0E-17 [67..129] [43..102]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLIFGKQL AFHKIVPTTA IGWLVPLGNP SLQIPGQKQL GSIHRWLREK LQQDHKDTED  60
   61 KDFFSNNGIL L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.396 d.58.7 RNA-binding domain, RBD
View Download 0.338 d.58.17 Metal-binding domain
View Download 0.357 a.28.1 ACP-like
View Download 0.329 a.28.1 ACP-like
View Download 0.303 a.6.1 Putative DNA-binding domain
View Download 0.282 a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.275 a.126.1 Serum albumin-like
View Download 0.267 a.23.5 Hemolysin expression modulating protein HHA
View Download 0.265 d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.263 a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.262 a.28.1 ACP-like
View Download 0.261 a.61.1 Retroviral matrix proteins
View Download 0.260 a.61.1 Retroviral matrix proteins
View Download 0.259 a.40.1 Calponin-homology domain, CH-domain
View Download 0.257 a.61.1 Retroviral matrix proteins
View Download 0.257 d.129.1 TATA-box binding protein-like
View Download 0.254 d.58.20 NAD-binding domain of HMG-CoA reductase
View Download 0.244 a.4.5 "Winged helix" DNA-binding domain
View Download 0.241 a.28.1 ACP-like
View Download 0.234 d.58.20 NAD-binding domain of HMG-CoA reductase
View Download 0.234 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.230 a.5.2 UBA-like
View Download 0.229 a.4.13 Sigma3 and sigma4 domains of RNA polymerase sigma factors
View Download 0.226 d.45.1 ClpS-like
View Download 0.225 d.58.7 RNA-binding domain, RBD
View Download 0.219 d.50.3 PI-Pfui intein middle domain
View Download 0.218 a.74.1 Cyclin-like
View Download 0.207 a.5.2 UBA-like
View Download 0.204 a.144.1 PABC (PABP) domain
View Download 0.201 d.141.1 Ribosomal protein L6

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.67761199764219 bayes_pls_golite062009
structural molecule activity 9.13063837111868 bayes_pls_golite062009
binding 1.23804226457865 bayes_pls_golite062009
protein binding 0.548750465345817 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [72-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVPKKKVSHQ KKRQKLYGPG KKQLKMIHHL NKCPSCGHYK RANTLCMYCV GQISHIWKTH  60
   61 TAKEEIKPRQ EEELSELDQR VLYPGRRDTK YTKDLKDKDN YLERRVRTLK KD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.30103
Match: 1jzxM_
Description: 50S subunit
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle