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View Structure Prediction Details

Protein: YCL075W
Organism: Saccharomyces cerevisiae
Length: 146 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCL075W.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
8.0E-31 [8..145] [145..289]
YCH5_YEAST - Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
YCL075W - Pseudogene: encodes fragment of Ty Pol protein
gi|151943924 - gi|151943924|gb|EDN62221.1| hypothetical protein SCY_0515 [Saccharomyces cerevisiae YJM789]
1.0E-28 [1..146] [1..146]
gi|8778361, gi|2... - gi|8778361|gb|AAF79369.1|AC007887_28 F15O4.39 [Arabidopsis thaliana], pir||F86476 protein F15O4.39 [...
2.0E-28 [6..146] [183..336]
gi|31432803, gi|... - gi|37535602|ref|NP_922103.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)], ...
4.0E-27 [16..145] [341..476]

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Predicted Domain #1
Region A:
Residues: [1-53]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIIYGADHR ISNCSLLKRR IPEARIFKLY PNDKTSRSSS ASVAIPDYET QGQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.09691
Match: 1a6bB_
Description: Zinc finger protein ncp10
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [54-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAGQITPKSW LCMLSSTVPA TKSSEWIFDT GCTSHMCHDR SIFSSFTRSS RKDFVRGVGG  60
   61 SIPIMGSGTV NIGTVQLHDV SYVPDLPVNL ISV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.376 0.704 RNA-directed DNA polymerase activity b.1.1 Immunoglobulin
View Download 0.543 0.058 protein binding b.1.2 Fibronectin type III
View Download 0.529 0.005 peptidase activity b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.472 0.001 DNA-directed DNA polymerase activity d.34.1 DNA-binding domain of Mlu1-box binding protein MBP1
View Download 0.543 N/A N/A b.1.2 Fibronectin type III
View Download 0.529 N/A N/A b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.472 N/A N/A d.34.1 DNA-binding domain of Mlu1-box binding protein MBP1
View Download 0.465 N/A N/A b.1.2 Fibronectin type III
View Download 0.377 N/A N/A d.175.1 Penicillin binding protein dimerisation domain
View Download 0.375 N/A N/A d.15.5 Staphylokinase/streptokinase
View Download 0.372 N/A N/A b.50.1 Acid proteases
View Download 0.355 N/A N/A d.95.2 Homing endonucleases
View Download 0.348 N/A N/A b.1.1 Immunoglobulin
View Download 0.345 N/A N/A b.1.1 Immunoglobulin
View Download 0.338 N/A N/A d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like
View Download 0.306 N/A N/A d.15.9 Glutamine synthetase, N-terminal domain
View Download 0.297 N/A N/A b.3.5 B repeat unit of collagen binding surface protein (cna)
View Download 0.292 N/A N/A b.1.1 Immunoglobulin
View Download 0.267 N/A N/A b.50.1 Acid proteases
View Download 0.262 N/A N/A b.12.1 Lipase/lipooxygenase domain (PLAT/LH2 domain)
View Download 0.258 N/A N/A b.1.2 Fibronectin type III
View Download 0.257 N/A N/A b.34.5 Translation proteins SH3-like domain
View Download 0.253 N/A N/A b.1.18 E set domains
View Download 0.209 N/A N/A b.34.5 Translation proteins SH3-like domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle