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View Structure Prediction Details

Protein: VAC17
Organism: Saccharomyces cerevisiae
Length: 423 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAC17.

Description E-value Query
Range
Subject
Range
VAC17 - Phosphoprotein involved in vacuole inheritance; degraded in late M phase of the cell cycle; acts as ...
VAC17_YEAST - vacuole-related protein 17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC17 PE=1 SV...
0.0 [1..423] [1..423]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-97 [229..423] [1..195]
gi|3717965 - gi|3717965|emb|CAA21052.1| EG:114D9.2 [Drosophila melanogaster]
0.01 [8..97] [294..371]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQALEDIT ERLLIRSQEA ILQLDLWIQR QQRSSICQTT DQESLDKLSQ QYNQYMSQLN  60
   61 SLYVRSESVR DKLSKEQQRR LITEDNEHQR IEDLVREFQD ITLRLNELAT VPNEAPNDSP 120
  121 QSQSTRSSLG SFQPRPLKII ERQRLCMV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.923 0.872 vacuolar membrane a.47.2 t-snare proteins

Predicted Domain #2
Region A:
Residues: [149-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSKPPKKSV GFNPINEVDC PSKTNSLPCS PKKQPARNRT LRAAKSHDTG LNKSKKPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [207-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDTYESFFK NRQRLSLTFF DEMDDEDFDS DQDTIILPNI STPPHVGVTA KGAEFEPLRR  60
   61 YNSHESILSN KPAPSKSLNL GSFSASFFRP SNPTFGTSIS NVQVNCHPTV AATMAPSRNG 120
  121 PRISSSKALL SSFIARSDTH TVKENNTNLK HASFMDKFNS SLSTISESFQ SKRGRKNKGM 180
  181 NEERISNHNV AQEQKNNMDI SVSIEELQDA LNTELLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle