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View Structure Prediction Details

Protein: YCL049C
Organism: Saccharomyces cerevisiae
Length: 312 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCL049C.

Description E-value Query
Range
Subject
Range
gi|3695281 - gi|3695281|gb|AAC62757.1| unknown [Saccharomyces pastorianus]
159.0 [0..203] [309..1]
gi|50284869, gi|... - gi|50284871|ref|XP_444863.1| hypothetical protein CAGL0A02277g [Candida glabrata CBS138], gi|5028486...
gi|49524164, gi|... - gi|49524165|emb|CAG57756.1| unnamed protein product [Candida glabrata], gi|49524164|emb|CAG57755.1| ...
77.0 [0..82] [259..98]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSKYLVTAS SLFVALTSAA STVDLDALLL LPGVESHDGV DTVFSTKDFY QVSFVKSIAP  60
   61 AIVNSSVIFH DVSRGVAMGN VKSRASIFNP EETYYDWEQY QVVNNGDWRT EWAPASDCIW 120
  121 REEKDNSDET PDR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.303 a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.241 a.79.1 Antitermination factor NusB
View Download 0.241 a.79.1 Antitermination factor NusB
View Download 0.206 a.79.1 Antitermination factor NusB

Predicted Domain #2
Region A:
Residues: [134-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPISVPYNWT SQYSIVDYDT DANEDNLDFR FIKSLLDKKN WLKKINQTVS QSSIMVAPMI  60
   61 RPYNVVQLWY SKDMVWANVQ RQYCSGVYPG GTQCSAWSRY YHVDAPTCDE PVASYMTKML 120
  121 ENEVQCPNER NATTLEPLRL NKQGDSDFSL TFEEEEEEET GSKSLWSTLK KIFSKRSIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle