YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: BUD3
Organism: Saccharomyces cerevisiae
Length: 1636 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD3.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [1..1320] [1..1320]
BUD3 - Protein involved in bud-site selection and required for axial budding pattern; localizes with septin...
gi|151943810 - gi|151943810|gb|EDN62110.1| bud site selection protein [Saccharomyces cerevisiae YJM789]
BUD3_YEAST - Bud site selection protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD3 PE=1 S...
0.0 [1..1636] [1..1636]
gi|11907608 - gi|11907608|gb|AAG41242.1|AF210625_2 Bud3 [Eremothecium gossypii]
0.0 [49..1247] [36..1259]
YLEU_DEBOC - Hypothetical 43.6 kDa protein - Debaryomyces occidentalis (Yeast) (Schwanniomyces occidentalis)
0.0 [243..567] [2..353]
gi|16554449, gi|... - gi|16554449|ref|NP_003377.1| zonadhesin isoform 3 [Homo sapiens], gi|12667414|gb|AAK01433.1|AF332977...
1.0E-46 [973..1441] [535..1003]

Back

Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDLSSLYS EKKDKENDET LFNIKLSKSV VETTPLNGHS LFDDDKSLSD WTDNVFTQSV  60
   61 FYHGSDDLIW GKFFVCVYKS PNSNKLNAII FDKLGTSCFE SVDISSNSQY YPAIENLSPS 120
  121 DQESNVKKCI AVILLQRYPL LSPSDLSQIL SNKSENCDYD PPYAGDLASS CQLITAVPPE 180
  181 DLGKRFFTSG LLQNRFVSST LLDVIYENNE STIELNNRLV FHLGEQLEQL FNPVTEYSPE 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [241-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTEYGYKAPE DELPTESDDD LVKAICNELL QLQTNFTFNL VEFLQKFLIA LRVRVLNEEI  60
   61 NGLSTTKLNR LFPPTIDEVT RINCIFLDSL KTAIPYGSLE VLKACSITIP YFYKAYTRHE 120
  121 AATKNFSKDI KLFIRHFSNV IPEREVYTEM KIESIIKGPQ EKLLKLKLII ERLWKSKKWR 180
  181 PKNQEMAKKC YNNIIDVIDS FGKLDSPLHS YSTRVFTPSG KILTELAKCW PVELQYKWLK 240
  241 RRVVGVYDVV DLNDENKRNL LVIFSDYVVF INILEAESYY TSDGSNRPLI SDILMNSLIN 300
  301 EVPLPSKIPK LKVERHCYID EVLVSILDKS TLRFDRLKGK DSFSMVCKLS SAFISSSSVA 360
  361 DLITKARILE KDTAFHLFKA SRSHFTLYST AHELC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [636-1558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYDSEKIKSK FALFLNIPPS KEILEVNNLH LAFFARFCSN DGRDNIVILD VLTKHDDKHI  60
   61 EVTSDNIVFT IINQLAIEIP ICFSSLNSSM AKDLLCVNEN LIKNLEHQLE EVKHPSTDEH 120
  121 RAVNSKLSGA SDFDATHEKK RSYGTITTFR SYTSDLKDSP SGDNSNVTKE TKEILPVKPT 180
  181 KKSSKKPREI QKKTKTNASK AEHIEKKKPN KGKGFFGVLK NVFGSKSKSK PSPVQRVPKK 240
  241 ISQRHPKSPV KKPMTSEKKS SPKRAVVSSP KIKKKSTSFS TKESQTAKSS LRAVEFKSDD 300
  301 LIGKPPDVGN GAHPQENTRI SSVVRDTKYV SYNPSQPVTE NTSNEKNVEP KADQSTKQDN 360
  361 ISNFADVEVS ASSYPEKLDA ETDDQIIGKA TNSSSVHGNK ELPDLAEVTT ANRVSTTSAG 420
  421 DQRIDTQSEF LRAADVENLS DDDEHRQNES RVFNDDLFGD FIPKHYRNKQ ENINSSSNLF 480
  481 PEGKVPQEKG VSNENTNISL KTNEDASTLT QKLSPQASKV LTENSNELKD TNNEGKDAKD 540
  541 IKLGDDYSDK ETAKEITKPK NFVEGITERK EIFPTIPRLA PPASKINFQR SPSYIELFQG 600
  601 MRVVLDKHDA HYNWKRLASQ VSLSEGLKVN TEEDAAIINK SQDDAKAERM TQISEVIEYE 660
  661 MQQPIPTYLP KAHLDDSGIE KSDDKFFEIE EELKEELKGS KTGNEDVGNN NPSNSIPKIE 720
  721 KPPAFKVIRT SPVRIIGRTF EDTRKYENGS PSDISFTYDT HNNDEPDKRL MELKFPSQDE 780
  781 IPDDRFYTPA EEPTAEFPVE ELPNTPRSIN VTTSNNKSTD DKLSSGNIDQ KPTELLDDLE 840
  841 FSSFNIAFGN TSMSTDNMKI SSDLSSNKTV LGNAQKVQES PSGPLIYVLP QSSTKHEKEG 900
  901 FLRKKQKDEP IWVSPSKIDF ADL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [1559-1636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRRTKALTPE RNTVPLKNND SRKYKYTGEG SIGNMTNMLL TKDASYAYLK DFVALSDDED  60
   61 EDGKQNCAVG GPEKLKFY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [1038-1216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLAEVTTAN RVSTTSAGDQ RIDTQSEFLR AADVENLSDD DEHRQNESRV FNDDLFGDFI  60
   61 PKHYRNKQEN INSSSNLFPE GKVPQEKGVS NENTNISLKT NEDASTLTQK LSPQASKVLT 120
  121 ENSNELKDTN NEGKDAKDIK LGDDYSDKET AKEITKPKNF VEGITERKEI FPTIPRLAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1217-1278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PASKINFQRS PSYIELFQGM RVVLDKHDAH YNWKRLASQV SLSEGLKVNT EEDAAIINKS  60
   61 QD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1279-1534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKAERMTQI SEVIEYEMQQ PIPTYLPKAH LDDSGIEKSD DKFFEIEEEL KEELKGSKTG  60
   61 NEDVGNNNPS NSIPKIEKPP AFKVIRTSPV RIIGRTFEDT RKYENGSPSD ISFTYDTHNN 120
  121 DEPDKRLMEL KFPSQDEIPD DRFYTPAEEP TAEFPVEELP NTPRSINVTT SNNKSTDDKL 180
  181 SSGNIDQKPT ELLDDLEFSS FNIAFGNTSM STDNMKISSD LSSNKTVLGN AQKVQESPSG 240
  241 PLIYVLPQSS TKHEKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1535-1636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFLRKKQKDE PIWVSPSKID FADLSRRTKA LTPERNTVPL KNNDSRKYKY TGEGSIGNMT  60
   61 NMLLTKDASY AYLKDFVALS DDEDEDGKQN CAVGGPEKLK FY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle