YRC Public Data Repository - Protein Structure Prediction

Protein:	BSD2
Organism:	Saccharomyces cerevisiae
Length:	321 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BSD2.

Description	E-value	Query Range	Subject Range
gi\|151946675 - gi\|151946675\|gb\|EDN64897.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207347443 - gi\|207347443\|gb\|EDZ73609.1\| YBR290Wp-like protein [Saccharomyces cerevisiae AWRI1631] BSD2 - Heavy metal ion homeostasis protein, facilitates trafficking of Smf1p and Smf2p metal transporters t... BSD2_YEAST - Metal homeostatis protein BSD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BSD2 PE=1...	0.0	[1..321]	[1..321]
SPAC328.07c - heavy metal ion homeostasis protein BSD2_SCHPO - Probable metal homeostasis protein bsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bs...	5.0E-51	[103..226]	[88..210]
NDFIP1 - Nedd4 family interacting protein 1 gi\|109079109 - gi\|109079109\|ref\|XP_001095360.1\| PREDICTED: similar to Nedd4 family interacting protein 1 [Macaca mu...	8.0E-30	[138..219]	[74..158]
gi\|12004976 - gi\|12004976\|gb\|AAG44248.1\| Nedd4 WW domain-binding protein 5 [Mus musculus]	8.0E-29	[138..219]	[133..217]
gi\|220956544, gi... - gi\|220956544\|gb\|ACL90815.1\| CG32177-PA [synthetic construct], gi\|220947008\|gb\|ACL86047.1\| CG32177-PA... CG32177-PA - This gene is referred to in FlyBase by the symbol Dmel\CG32177 (CG32177, FBgn0052177). It is a prote...	9.0E-16	[173..218]	[160..205]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEQELLIGQ EMNTLHAGSS TDGINVGNAG RTRDTQTGVE GETEIGSDEE DSIEDEGSSS  60
   61 GGNSTTERLV PHQLREQAAR HIGKIGRHFN ILDRLFKKRT QQSSDIQQGA MFDGVFSNLS 120
  121 AKPDTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETEGNNEQDI PPTYDEAAAD MAPSYYGMDL NNSDIYYDEI CIEGLPVGNI ANLLWNIIVS  60
   61 TSFQFIGFLI TYILHTSHAA KQGSRFGLGL TFIGYGYSMI PNDVTSKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [235-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKNKSLNRME LEDPNEFDDV RLNSQSTTQD KFESHLNHGL DEEKQNIPWL AVFVAFLGLF  60
   61 ITLKSIYDYI QVKKLEKKYL NQSQNQA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits