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View Structure Prediction Details

Protein: APM3
Organism: Saccharomyces cerevisiae
Length: 483 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APM3.

Description E-value Query
Range		 Subject
Range
AP1M2_ARATH - AP-1 complex subunit mu-2 OS=Arabidopsis thaliana GN=AP1M2 PE=1 SV=1
 0.0 [2..483] [5..427]
gi|149757264 - gi|149757264|ref|XP_001502865.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subun...
AP1M1 - adaptor-related protein complex 1, mu 1 subunit
gi|109123796 - gi|109123796|ref|XP_001112653.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subun...
gi|114675917, gi... - gi|114675917|ref|XP_001172777.1| PREDICTED: adaptor-related protein complex 1, mu 1 subunit isoform ...
gi|73986080 - gi|73986080|ref|XP_852486.1| PREDICTED: similar to adaptor-related protein complex 1, mu 1 subunit i...
AP1M1_BOVIN - AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3
 0.0 [2..482] [3..421]
gi|55249923 - gb|AAH86151.1| Unknown (protein for MGC:98582) [Xenopus laevis]
AP1M1_MOUSE - AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3
 0.0 [2..482] [3..421]
unc-101 - clathrin coat assembly protein status:Confirmed UniProt:P35602 protein_id:CAB05557.3
 0.0 [3..483] [4..421]
gi|12000357 - gi|12000357|gb|AAG11391.1| clathrin-adaptor medium chain apm 1 [Dictyostelium discoideum]
 0.0 [2..482] [3..426]

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Predicted Domain #1
Region A:
Residues: [1-166] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSFYITDT KNKLIFQYLL GATAPSFKHL WTRVRTTCPQ LLEDSSSDDY LDHSMVGRDL  60
   61 EVYKYFSVIN KLNYWCLAST SKSKGPLDCF TFLETIDRIL LEYFDKDKLS IKKIVNNYDR 120
  121 ISLIFNCCVE AGEPNVSDML YVNKIKEAVP ERSDLSKFIS STAHNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 213.9897
Match: 1gw5M_
Description: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor; Mu2 adaptin (clathrin coat assembly protein AP50)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [167-483] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQAVQLPQQR QQQLQQNQIS RGSNSLIENE EIVPWRTSRA SKHENNELYV DLLETFHVVF  60
   61 EKKKSHLRLL TGSIHGIVDV RSYLNDNPLV AVKLNTMGND IGIPSLHDCV EINDGVFSPS 120
  121 NITFIPPDGK FRLLEYSVDL SSQVKQSGVR MNSIGLMSLH FQNGLGKDSD EFELSLNIEN 180
  181 FKKVSQVDDL KIDLQFNVEN ADPNEIAYKI KILRNTHGRF ENSIIMGQGQ WIFDKSTATG 240
  241 TVPVLRGCIE YENTGPNFTK KVDLQTVSLE YSYIGQSASG IYVEAIDIVS GLTIGKNTKL 300
  301 YKGAKYKTQT GNFQVRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 213.9897
Match: 1gw5M_
Description: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor; Mu2 adaptin (clathrin coat assembly protein AP50)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle