YRC Public Data Repository - Protein Structure Prediction

Protein:	HSM3
Organism:	Saccharomyces cerevisiae
Length:	480 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSM3.

Description	E-value	Query Range	Subject Range
HSM3_CANGA - DNA mismatch repair protein HSM3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0... HSM3_CANGA - DNA mismatch repair protein HSM3 OS=Candida glabrata GN=HSM3 PE=3 SV=1	281.0	[0..32]	[455..31]
HSM3_ASHGO - DNA mismatch repair protein HSM3 OS=Ashbya gossypii GN=HSM3 PE=3 SV=1 HSM3_ASHGO - DNA mismatch repair protein HSM3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NR...	264.0	[0..9]	[466..6]
HSM3_KLULA - DNA mismatch repair protein HSM3 OS=Kluyveromyces lactis GN=HSM3 PE=3 SV=1 HSM3_KLULA - DNA mismatch repair protein HSM3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / ...	245.0	[0..28]	[471..23]
gi\|238883480 - gi\|238883480\|gb\|EEQ47118.1\| conserved hypothetical protein [Candida albicans WO-1] HSM3_CANAL - DNA mismatch repair protein HSM3 OS=Candida albicans GN=HSM3 PE=3 SV=1 HSM3_CANAL - DNA mismatch repair protein HSM3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=HSM3 PE=3 SV...	64.0	[0..54]	[472..49]
gi\|50419449, gi\|... - gi\|50419449\|ref\|XP_458251.1\| hypothetical protein DEHA0C14168g [Debaryomyces hansenii CBS767], gi\|49... HSM3_DEBHA - DNA mismatch repair protein HSM3 - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)	60.0	[0..9]	[466..32]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKETNYVE NLLTQLENEL NEDNLPEDIN TLLRKCSLNL VTVVSLPDMD VKPLLATIKR  60
   61 FLTSNVSYDS LNYDYLLDVV DKLVPMADFD DVLEVYSAED LVKALRSEID PLKVAACRVI 120
  121 ENSQPKGLFA TSNIIDILLD ILFDEKVEND KLITAIEKAL ERLSTDELIR RRLFDNNLPY 180
  181 LVSVKGRMET VSFVRLIDFL TIEFQFISGP EFKDIIFCFT KEEILKSVED ILVFIELVNY 240
  241 YTKFLLEIRN QDKYWALRHV KKILPVFAQL FEDTENYPDV RAFSTNCLLQ LFAEVSRIEE 300
  301 DEYSLFKTMD KDSLKIGSEA KLITEWLELI NPQYLVKYHK DVVENYFHVS GYSIGMLRNL 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	7.18
Match:
Description:	No description for 1qoyA was found.

Predicted Domain #2

Region A:
Residues: [361-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SADEECFNAI RNKFSAEIVL RLPYLEQMQV VETLTRYEYT SKFLLNEMPK VMGSLIGDGS  60
   61 AGAIIDLETV HYRNSALRNL LDKGEEKLSV WYEPLLREYS KAVNGKNYST GSETKIADCR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits