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View Structure Prediction Details

Protein: SRB6
Organism: Saccharomyces cerevisiae
Length: 121 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRB6.

Description E-value Query
Range
Subject
Range
MED22_ASHGO - Mediator of RNA polymerase II transcription subunit 22 OS=Ashbya gossypii (strain ATCC 10895 / CBS 1...
MED22_ASHGO - Mediator of RNA polymerase II transcription subunit 22 OS=Ashbya gossypii GN=SRB6 PE=3 SV=1
86.0 [0..1] [115..1]
MED22_CANGA - Mediator of RNA polymerase II transcription subunit 22 OS=Candida glabrata (strain ATCC 2001 / CBS 1...
MED22_CANGA - Mediator of RNA polymerase II transcription subunit 22 OS=Candida glabrata GN=SRB6 PE=3 SV=1
84.0 [0..1] [118..1]
MED22_KLULA - Mediator of RNA polymerase II transcription subunit 22 OS=Kluyveromyces lactis (strain ATCC 8585 / C...
MED22_KLULA - Mediator of RNA polymerase II transcription subunit 22 OS=Kluyveromyces lactis GN=SRB6 PE=3 SV=1
74.0 [0..1] [111..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQALYEKL EQTRTILSVK LAELINMTTI ADRNDDDEGS FAQENSELAV ATTSVMMVNN  60
   61 QTMQLIKNVQ DLLILTRSIK EKWLLNQIPV TEHSKVTRFD EKQIEELLDN CIETFVAEKT 120
  121 T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.852 a.47.1 STAT


YRC Informatics Platform - Version 3.0
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