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View Structure Prediction Details

Protein: ARC40
Organism: Saccharomyces cerevisiae
Length: 384 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARC40.

Description E-value Query
Range
Subject
Range
gi|17225208 - gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]
0.0 [4..383] [910..1247]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [3..384] [1142..1481]

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Predicted Domain #1
Region A:
Residues: [1-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSNSKDKS VVAVYKLVKA PIYSHCFSQD KSILAVTCET DCLVYRVSNN TPPVLFATLK  60
   61 DHDKTITAVD ISIHGRIVTC SQDRNAYVWE PLSDGTYKPT LVLLRINRAA TSVTWAPNGY 120
  121 KFAVGSSARI IAVCYYEHEN NWWVSKHIKK PIKSTINCLS WHANGVLLAA GGTDGFMRVF 180
  181 SGFIKGLDSK ESVAGSPWGQ KFPFGCLIRE WYQGSYIHDV EWRSQMERIA YVAHDGTLNV 240
  241 VDYQSPVQSV NAPEGLPYRS LVWINDHEIV CGGYSCHPVL FSEASEGWKF AKNLDKSDNN 300
  301 KSSALTASGN TDELSGNNDE SSTFGISALR KFKELDLKGK VSTDVQESAH ENAIVELRPF 360
  361 AESNGQITQV SSCGLDGKIV IYTI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 659.30103
Match: 1k8kC_
Description: Arp2/3 complex 41 kDa subunit ARPC1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
actin binding 3.86142918698875 bayes_pls_golite062009
cytoskeletal protein binding 3.1056443224755 bayes_pls_golite062009
actin filament binding 2.0735069176589 bayes_pls_golite062009
binding 1.79788997337153 bayes_pls_golite062009
dynein binding 1.69349714290074 bayes_pls_golite062009
protein binding 1.11897341394404 bayes_pls_golite062009
myosin binding 0.989691178611801 bayes_pls_golite062009
tubulin binding 0.968047176592527 bayes_pls_golite062009
microtubule binding 0.834073483714259 bayes_pls_golite062009
transporter activity 0.692270256454453 bayes_pls_golite062009
0.45054027253231 bayes_pls_golite062009
myosin II binding 0.33142771724387 bayes_pls_golite062009
myosin heavy chain kinase activity 0.231534552000461 bayes_pls_golite062009
substrate-specific transporter activity 0.121183207943714 bayes_pls_golite062009
structural constituent of cytoskeleton 0.118975415284669 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.00585398682921312 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle