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View Structure Prediction Details

Protein: YBR204C
Organism: Saccharomyces cerevisiae
Length: 375 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR204C.

Description E-value Query
Range
Subject
Range
YBR204C - Serine hydrolase; YBR204C is not an essential gene
0.0 [1..375] [1..375]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMAERAEAT KSWSCEPLSG KTLEEIVQNA ENAADLVAYI RKPEVDLDFR LKFIAEHEEF  60
   61 FNEQLSDRNS RIRTCHNLSD KGIRG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.547 a.101.1 Uteroglobin-like
View Download 0.494 a.4.5 "Winged helix" DNA-binding domain
View Download 0.488 a.118.11 Cytochrome c oxidase subunit E
View Download 0.476 a.4.5 "Winged helix" DNA-binding domain
View Download 0.462 a.64.1 Saposin
View Download 0.444 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.420 a.4.3 ARID-like
View Download 0.417 a.64.1 Saposin
View Download 0.411 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.395 a.4.1 Homeodomain-like
View Download 0.381 a.64.1 Saposin
View Download 0.355 a.4.1 Homeodomain-like
View Download 0.341 a.4.1 Homeodomain-like
View Download 0.321 a.74.1 Cyclin-like
View Download 0.316 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.311 a.37.1 A DNA-binding domain in eukaryotic transcription factors
View Download 0.310 a.4.1 Homeodomain-like
View Download 0.310 a.29.2 Bromodomain
View Download 0.292 a.7.6 Ribosomal protein S20
View Download 0.274 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.270 a.23.5 Hemolysin expression modulating protein HHA
View Download 0.266 a.4.1 Homeodomain-like
View Download 0.253 a.4.12 TrpR-like
View Download 0.250 a.4.1 Homeodomain-like
View Download 0.249 a.60.7 5' to 3' exonuclease, C-terminal subdomain
View Download 0.240 a.4.1 Homeodomain-like
View Download 0.239 a.60.2 RuvA domain 2-like
View Download 0.238 a.4.5 "Winged helix" DNA-binding domain
View Download 0.235 a.4.5 "Winged helix" DNA-binding domain
View Download 0.233 a.118.8 TPR-like
View Download 0.232 a.150.1 Anti-sigma factor AsiA
View Download 0.232 a.64.1 Saposin
View Download 0.228 a.101.1 Uteroglobin-like
View Download 0.223 a.4.12 TrpR-like
View Download 0.220 a.4.1 Homeodomain-like
View Download 0.217 a.61.1 Retroviral matrix proteins
View Download 0.216 d.55.1 Ribosomal protein L22
View Download 0.212 a.4.2 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
View Download 0.210 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.206 a.3.1 Cytochrome c
View Download 0.205 a.24.13 Domain of the SRP/SRP receptor G-proteins

Predicted Domain #2
Region A:
Residues: [86-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTVFVFVPGL AGNLEQFEPL LELVDSDQKA FLTLDLPGFG HSSEWSDYPM LKVVELIFVL  60
   61 VCDVLRKWST AVPNNDNVNP FNGHKIVLVG HSMGCFLACH LYEQHMADTK AVQTLVLLTP 120
  121 PKAHIEQLSK DKHIIQWALY GVFKLPWLFD VYRNKFDQVK GLQSSGIKQY FYQQGDDVKL 180
  181 KYRKFWQFKN NISNKSRTII GYLLGWETVD WVKFNGVLTQ TDMKQKIIIF GAEKDPIAPI 240
  241 ENLEFYKQTI NKECLRKVII LPDCSHNLCF DRPELVCENF QREVIDNSKL 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 36.346787
Match: PF00561
Description: alpha/beta hydrolase fold

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle