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View Structure Prediction Details

Protein: YBR197C
Organism: Saccharomyces cerevisiae
Length: 217 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR197C.

Description E-value Query
Range
Subject
Range
YP077_YEAST - Uncharacterized protein YPL077C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL077C ...
YPL077C - Putative protein of unknown function; regulates PIS1 expression; mutant displays spore wall assembly...
gi|151942719 - gi|151942719|gb|EDN61065.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|207340537 - gi|207340537|gb|EDZ68860.1| YPL077Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190407876 - gi|190407876|gb|EDV11141.1| hypothetical protein SCRG_02417 [Saccharomyces cerevisiae RM11-1a]
179.0 [0..106] [215..113]
gi|44983255, gi|... - gi|45190359|ref|NP_984613.1| AEL248Cp [Ashbya gossypii ATCC 10895], gi|44983255|gb|AAS52437.1| AEL24...
gi|44983255 - gi|44983255|gb|AAS52437.1| AEL248Cp [Ashbya gossypii ATCC 10895]
65.0 [0..70] [169..3]
gi|49528891, gi|... - gi|50294331|ref|XP_449577.1| hypothetical protein CAGL0M05313g [Candida glabrata CBS138], gi|4952889...
gi|49528891 - gi|49528891|emb|CAG62553.1| unnamed protein product [Candida glabrata]
64.0 [0..109] [214..136]
gi|50309997, gi|... - gi|50309997|ref|XP_455012.1| unnamed protein product [Kluyveromyces lactis], gi|49644147|emb|CAH0009...
gi|49644147 - gi|49644147|emb|CAH00099.1| KLLA0E23497p [Kluyveromyces lactis]
54.0 [0..106] [160..52]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVKQTPPVQ VKVSDADSTN RRKSSSQEGN PQLVQLKAKS DKDKRKGSSD STASIMGSSN  60
   61 ALPTKNLTT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.532 d.15.7 Immunoglobulin-binding domains
View Download 0.380 a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.374 a.179.1 Replisome organizer (g39p helicase loader/inhibitor protein)
View Download 0.350 d.230.3 Amyloid beta a4 protein copper binding domain (domain 2)

Predicted Domain #2
Region A:
Residues: [70-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPALNPLTTS ISRGNTAYER SVNGSRITMH SNLAPTETQD VSWSEIDTLD DVKKMAKEPI  60
   61 VNDGFPRDFE SNLTQMRKSH AQLLRLMRER NQRLKYAKLR SPPHKDQHNS ATNKDQEPDE 120
  121 VLHDPEIALD GEKYVSQVVD TIKDVHRC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.514 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.424 N/A N/A a.215.1 Description not found.
View Download 0.413 N/A N/A a.7.4 Smac/diablo
View Download 0.413 N/A N/A a.7.4 Smac/diablo
View Download 0.402 N/A N/A a.26.1 4-helical cytokines
View Download 0.402 N/A N/A a.26.1 4-helical cytokines
View Download 0.343 N/A N/A a.29.13 Description not found.
View Download 0.333 N/A N/A c.55.1 Actin-like ATPase domain
View Download 0.306 N/A N/A a.24.16 Nucleotidyltransferase substrate binding subunit/domain
View Download 0.257 N/A N/A a.39.1 EF-hand


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle