YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MED8
Organism: Saccharomyces cerevisiae
Length: 223 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED8.

Description E-value Query
Range
Subject
Range
MED8_YEAST - Mediator of RNA polymerase II transcription subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 20450...
MED8 - Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...
0.0 [1..215] [1..215]
med8 - mediator complex subunit Med8
MED8_SCHPO - Mediator of RNA polymerase II transcription subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATC...
2.0E-59 [31..180] [11..164]

Back

Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSTASLVP EGNQGSLQED VSFDFNGVPG QALDAVRMRL AQLTHSLRRI RDEMSKAELP  60
   61 QWYTLQSQLN VTLSQLVSVT STLQHFQETL DSTVVYPLPK FPTTSHESLV TTLLRKKNIP 120
  121 EVDEWMKYVR ETSGVTTALL KDEEIEKLLQ QDREITNWAR TTFRNEYGKH DFKNEESLSE 180
  181 EHASLLVRDS KPSKPFNVDD VLKFTFTGEK PIITGSTSTS SSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle