YRC Public Data Repository - Protein Structure Prediction

Protein:	RIB7
Organism:	Saccharomyces cerevisiae
Length:	244 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIB7.

Description	E-value	Query Range	Subject Range
RIB7_YEAST - 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase OS=Saccharomyces cerevisiae (st... RIB7 - Diaminohydroxyphoshoribosylaminopyrimidine deaminase; catalyzes the second step of the riboflavin bi...	4.0E-62	[1..244]	[1..244]
RIBD_BACSU - Riboflavin biosynthesis protein RibD OS=Bacillus subtilis GN=ribD PE=1 SV=1 gi\|221323767 - gi\|221323767\|ref\|ZP_03605061.1\| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str... gi\|34873545 - gi\|34873545\|gb\|AAQ83285.1\| RibG [Cloning vector pRFN4] gi\|221319491 - gi\|221319491\|ref\|ZP_03600785.1\| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str... RIBD_BACSU - Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain 168) GN=ribD PE=1 SV=1 gi\|221314569 - gi\|221314569\|ref\|ZP_03596374.1\| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str...	2.0E-60	[1..242]	[121..353]
RIBD_BACAM - Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens GN=ribD PE=3 SV=1	2.0E-60	[4..242]	[124..353]
gi\|189377412, gi... - gi\|189377412\|gb\|EDU95828.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC50... gi\|168786258, gi... - gi\|189373620\|gb\|EDU92036.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC86... gi\|188999379, gi... - gi\|188999379\|gb\|EDU68365.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC40... gi\|187768260, gi... - gi\|187768260\|gb\|EDU32104.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC41... gi\|208737025, gi... - gi\|208822832\|ref\|ZP_03263150.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. ... gi\|15829721, gi\|... - gi\|15829721\|ref\|NP_308494.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|208815640, gi... - gi\|208815640\|ref\|ZP_03256819.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. ... gi\|208725980, gi... - gi\|208806179\|ref\|ZP_03248516.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. ... gi\|195938521 - gi\|195938521\|ref\|ZP_03083903.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5... gi\|209744092, gi... - pir\|\|G85537 hypothetical protein ribD [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15800143, gi\|... - gi\|15800143\|ref\|NP_286155.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|15829721, gi\|... - gi\|15829721\|ref\|NP_308494.1\| pyrimidine deaminase [Escherichia coli O157:H7], gi\|13359924\|dbj\|BAB338... gi\|168768362, gi... - gi\|189362505\|gb\|EDU80924.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC44... gi\|168761617, gi... - gi\|189368039\|gb\|EDU86455.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC45... gi\|189355992, gi... - gi\|189355992\|gb\|EDU74411.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC44... gi\|168749873, gi... - gi\|188015886\|gb\|EDU54008.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC41... gi\|217325532, gi... - gi\|217325532\|ref\|ZP_03441616.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. ... gi\|209157113, gi... - gi\|209395713\|ref\|YP_002269058.1\| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.... gi\|254791597, gi... - gi\|254791597\|ref\|YP_003076434.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase ...	6.0E-60	[9..240]	[130..359]
gi\|161615396, gi... - gi\|161615396\|ref\|YP_001589361.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/... lcl\|NC_016856.1_... - [gene=ribD] [protein=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5... gi\|197242903, gi... - gi\|197264648\|ref\|ZP_03164722.1\| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. ent... gi\|224466781, gi... - gi\|224582254\|ref\|YP_002636052.1\| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. en... gi\|194401025, gi... - gi\|194442362\|ref\|YP_002039658.1\| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. en... gi\|194449088, gi... - gi\|194449088\|ref\|YP_002044451.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/... gi\|167992266, gi... - gi\|205329484\|gb\|EDZ16248.1\| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enteric... gi\|16418920, gi\|... - gi\|16763796\|ref\|NP_459411.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|168240239, gi... - gi\|205339872\|gb\|EDZ26636.1\| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enteric...	2.0E-59	[9..240]	[130..359]
gi\|238899702, gi... - gi\|238899702\|ref\|YP_002925498.1\| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-a... EG11321 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) ur... gi\|85674554, gi\|... - gi\|89107284\|ref\|AP_001064.1\| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amin... EG11321 - fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) ur... gi\|170080000, gi... - gi\|170080000\|ref\|YP_001729320.1\| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-a... RIBD_ECOLI - Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminas...	3.0E-59	[9..240]	[130..359]
gi\|15900115, gi\|... - gi\|15900115\|ref\|NP_344719.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae TIGR4], ... gi\|25331490 - pir\|\|F95020 riboflavin biosynthesis protein RibD [imported] - Streptococcus pneumoniae (strain TIGR4...	4.0E-59	[2..241]	[126..353]
gi\|213427850 - gi\|213427850\|ref\|ZP_03360600.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5... gi\|213650168 - gi\|213650168\|ref\|ZP_03380221.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5... gi\|213855380 - gi\|213855380\|ref\|ZP_03383620.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5... gi\|214000373 - gi\|214000373\|ref\|ZP_03411108.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5... gi\|16759393 - gi\|16759393\|ref\|NP_455010.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am... gi\|16501684, gi\|... - gi\|25331497\|pir\|\|AH0553 riboflavin biosynthesis protein RibD [imported] - Salmonella enterica subsp.... gi\|29142835, gi\|... - gi\|29142835\|ref\|NP_806177.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	5.0E-59	[9..240]	[130..359]
gi\|182683162, gi... - gi\|182683162\|ref\|YP_001834909.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CGSP... gi\|183577789, gi... - gi\|183577789\|gb\|EDT98317.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae MLV-016],... gi\|147757179, gi... - gi\|148996604\|ref\|ZP_01824322.1\| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP11-BS7... gi\|116076349, gi... - gi\|116515773\|ref\|YP_815688.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39], g... gi\|25331496 - pir\|\|D97892 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) [imported] - Streptococ... gi\|15902208, gi\|... - gi\|15902208\|ref\|NP_357758.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6], gi\|...	7.0E-59	[2..241]	[126..353]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-58	[1..241]	[168..400]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTPLCEDL PQFLQNYLPN AGQTENTIVP FVTLTYAQSL DARVSRGPGV RTTISHPETK  60
   61 TMTHYLRHHH DGILVGSGTV LADNPGLNCK WGPDPAANSP RPIIIDTKQK WRFDGSKMQE 120
  121 LFIKRQGKPP IVVVTSEPII KEQHVDYAIC PINDTTKLVD WKKLFEILKE EFNIRSVMVE 180
  181 GGANVINQLL LRSDIVNSLI ITIGSTFLGS SGTEVSPPQT VNLKDMSWWK GITDVVLCAR 240
  241 LADD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1cz3A_
Description:	Dihydrofolate reductase, prokaryotic type
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits