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View Structure Prediction Details

Protein: YSW1
Organism: Saccharomyces cerevisiae
Length: 609 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSW1.

Description E-value Query
Range
Subject
Range
YSW1 - Protein required for normal prospore membrane formation; interacts with Gip1p, which is the meiosis-...
YSW1_YEAST - Spore-specific protein YSW1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSW1 PE=1 SV...
0.0 [1..609] [1..609]
gi|7435723 - pir||C71956 probable endopeptidase Clp ATP-binding chain - Helicobacter pylori (strain J99)
CLPB_HELPJ - Chaperone protein ClpB OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=clpB PE=3 SV=1
0.001 [202..506] [314..633]

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Predicted Domain #1
Region A:
Residues: [1-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLADTVEG SEAKRGRFSN NALTSDTGIL QKNSTLRNWF LKPTADLKNS CEDRVEDDVN  60
   61 DVYLNDKNSQ KSVEERKLGR KVRSFFKQTN SNKDESVLED EDDALVWKKT SNKCAKKENS 120
  121 HDIQKGSFTK KIRNSIFKSA NDVKEFRNEN NLLLPVELSS DDENESHFTD ANSHVMQSKS 180
  181 PEKIPSKDQC LTKGAKNKGL KKEYEKSFEE YSDDSDDEFS PATPPENVLE GPYKFVFQTP 240
  241 NTFTSQPNIT VENDFHKGGR HVIDYLNKKL ATMNIDIDLT S

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.7
Match: 1iu4A
Description: Microbial transglutaminase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [282-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGKQNVSWEE ELDQLSDHVI ESITNHISKG RMHAQEKQDE LEKLKLENLN LSTLKQENLQ  60
   61 HKQEINSLKD NLESISKKNN DLILEMNKLK KKSTNNKTNE YISTDENENE EITKSNMGPG 120
  121 ILELNVNETS KKLQQSTFKP SKYLPRETRN NENRLKHLEK RIFGLEKSLE KKKKQVRADS 180
  181 VRLDLNRYTI DQFLTLLKSL SEVLQFHNVY GNDLKENDDN IIKIETCCSA LNMKNCFEDS 240
  241 SFRLQENSFK RQLGPLFANI NFSLIDQLTM NFRFYERSAN FQKETIGGLR MMLQDKDNYI 300
  301 KTLMQHLKKK ESTKLIKDSK NGASTLTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle