YRC Public Data Repository - Protein Structure Prediction

Protein:	YBR137W
Organism:	Saccharomyces cerevisiae
Length:	179 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR137W.

Description	E-value	Query Range	Subject Range
gi\|190408708 - gi\|190408708\|gb\|EDV11973.1\| hypothetical protein SCRG_02832 [Saccharomyces cerevisiae RM11-1a] gi\|151946527 - gi\|151946527\|gb\|EDN64749.1\| conserved protein [Saccharomyces cerevisiae YJM789] YBY7_YEAST - UPF0303 protein YBR137W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR137W PE=1 SV=... YBR137W - Protein of unknown function; localized to the cytoplasm; binds to Replication Protein A (RPA); YBR13...	302.0	[0..1]	[179..1]
YT83_RHIME, Y298... - (P29953) Hypothetical UPF0303 protein R02983, UPF0303 protein R02983 OS=Rhizobium meliloti GN=R02983... Y2983_RHIME - UPF0303 protein R02983 OS=Rhizobium meliloti (strain 1021) GN=R02983 PE=3 SV=2	208.0	[0..15]	[169..8]
gi\|152406 - gi\|152406\|gb\|AAA26355.1\| ORF1; putative [Sinorhizobium meliloti]	208.0	[0..15]	[169..8]
Y2872_SINMW - UPF0303 protein Smed_2872 OS=Sinorhizobium medicae (strain WSM419) GN=Smed_2872 PE=3 SV=1	206.0	[0..15]	[174..8]
Y1353_ZYMMO, Y30... - (Q9XBS9) Hypothetical UPF0303 protein Zm10ORF2, UPF0303 protein ZMO1353 OS=Zymomonas mobilis GN=ZMO1... Y1353_ZYMMO - UPF0303 protein ZMO1353 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO13... gi\|241373993, gi... - gi\|241761685\|ref\|ZP_04759772.1\| protein of unknown function DUF336 [Zymomonas mobilis subsp. mobilis...	203.0	[0..19]	[174..13]
gi\|49524505, gi\|... - gi\|50285545\|ref\|XP_445201.1\| unnamed protein product [Candida glabrata], gi\|49524505\|emb\|CAG58105.1\|... gi\|49524505 - gi\|49524505\|emb\|CAG58105.1\| unnamed protein product [Candida glabrata]	202.0	[0..4]	[179..3]
YFE4_RHILO, Y514... - (Q98CH8) Hypothetical UPF0303 protein mlr5144, UPF0303 protein mlr5144 OS=Rhizobium loti GN=mlr5144 ... Y5144_RHILO - UPF0303 protein mlr5144 OS=Rhizobium loti (strain MAFF303099) GN=mlr5144 PE=3 SV=1	192.0	[0..19]	[169..7]
Y2661_YERPB - UPF0303 protein YPTS_2661 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2661 PE=... Y2566_YERPS - UPF0303 protein YPTB2566 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2566 PE=3... Y2566_YERPS - UPF0303 protein YPTB2566 OS=Yersinia pseudotuberculosis GN=YPTB2566 PE=3 SV=1	186.0	[0..16]	[169..4]
gi\|21958449, gi\|... - gi\|22125548\|ref\|NP_668971.1\| hypothetical protein y1653 [Yersinia pestis KIM], gi\|21958449\|gb\|AAM852... gi\|115348231, gi... - gi\|218929620\|ref\|YP_002347495.1\| hypothetical protein YPO2534 [Yersinia pestis CO92], gi\|16122752\|re... gi\|165914364, gi... - gi\|89105731\|ref\|ZP_01178245.1\| COG4702: Uncharacterized conserved protein [Yersinia pestis biovar Or... Y2026_YERPA - UPF0303 protein YPA_2026 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2026 PE=3 SV=1 Y2129_YERPN - UPF0303 protein YPN_2129 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2129 PE=3 SV=1 Y1792_YERPG - UPF0303 protein YpAngola_A1792 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1792 PE=3... Y1944_YERPP - UPF0303 protein YPDSF_1944 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1944 PE=3 SV=1 gi\|165925632, gi... - gi\|165925632\|ref\|ZP_02221464.1\| protein /y1653/ [Yersinia pestis biovar Orientalis str. F1991016], g... gi\|165992884, gi... - gi\|166008502\|ref\|ZP_02229400.1\| protein /y1653/ [Yersinia pestis biovar Antiqua str. E1979001], gi\|1... gi\|229688180, gi... - gi\|229898632\|ref\|ZP_04513777.1\| hypothetical protein YPF_3067 [Yersinia pestis biovar Orientalis str... gi\|166205013, gi... - gi\|166213839\|ref\|ZP_02239874.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229838072, gi... - gi\|229838072\|ref\|ZP_04458231.1\| hypothetical protein YPH_0298 [Yersinia pestis biovar Orientalis str... gi\|167399159, gi... - gi\|167399159\|ref\|ZP_02304683.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167422297, gi... - gi\|167422297\|ref\|ZP_02314050.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167424484, gi... - gi\|167424484\|ref\|ZP_02316237.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167468593 - gi\|167468593\|ref\|ZP_02333297.1\| hypothetical protein YpesF_11999 [Yersinia pestis FV-1] Y2534_YERPE - UPF0303 protein YPO2534/y1653/YP_2345 OS=Yersinia pestis GN=YPO2534 PE=3 SV=1 gi\|149365560, gi... - gi\|149365560\|ref\|ZP_01887595.1\| hypothetical protein YPE_0728 [Yersinia pestis CA88-4125], gi\|149291...	186.0	[0..16]	[169..4]
Y598_BRUME - UPF0303 protein BMEI0598 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=... Y598_BRUME - UPF0303 protein BMEI0598 OS=Brucella melitensis GN=BMEI0598 PE=3 SV=1	182.0	[0..16]	[170..8]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLDKKLLE RLTSRKVPLE ELEDMEKRCF LSTFTYQDAF DLGTYIRNAV KENFPEKPVA  60
   61 IDISLPNGHC LFRTVTYGGS ALDNDFWIQR KKKTALRFGH SSFYMGCKKS DKTPEEKFFV 120
  121 DSKEYAFHGG AVLIQSERSD YPYACLTISG LKQEEDHLMA VSSLIAFANE SLEEDLNLD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.0
Match:	2a2lA
Description:	Crystal structure of Klebsiella pneumoniae hypothetical protein ORFY, New York Structural Genomics Consortium
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits