YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CKS1
Organism: Saccharomyces cerevisiae
Length: 150 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKS1.

Description E-value Query
Range
Subject
Range
CKS1_YEAST - Cyclin-dependent kinases regulatory subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...
CKS1 - Cyclin-dependent protein kinase regulatory subunit and adaptor; modulates proteolysis of M-phase tar...
gi|151946525 - gi|151946525|gb|EDN64747.1| cyclin-dependent protein kinase subunit [Saccharomyces cerevisiae YJM789...
2.0E-49 [1..150] [1..150]
gi|157833583, gi... - gi|157833583|pdb|1PUC|A Chain A, P13suc1 In A Strand-Exchanged Dimer, gi|1421400|pdb|1PUC| Chain ,...
1.0E-35 [11..107] [7..103]
suc1 - cyclin-dependent protein kinase regulatory subunit Suc1
CKS1_SCHPO - Cyclin-dependent kinases regulatory subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...
2.0E-35 [11..107] [8..104]
gi|3108171, gi|3... - gi|3108171|gb|AAC15772.1| Cdc2 binding protein Suc1 [Pneumocystis carinii f. sp. carinii], gi|310816...
1.0E-32 [11..111] [11..111]
CE22913 - status:Partially_confirmed UniProt:Q95XM4 protein_id:AAK73928.1
2.0E-30 [26..129] [2..98]
CKS1_LEIME - Cyclin-dependent kinases regulatory subunit OS=Leishmania mexicana PE=3 SV=1
1.0E-27 [21..104] [24..98]
CKS2_ARATH - Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1
2.0E-27 [27..115] [3..82]

Back

Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHHYHAFQG RKLTDQERAR VLEFQDSIHY SPRYSDDNYE YRHVMLPKAM LKVIPSDYFN  60
   61 SEVGTLRILT EDEWRGLGIT QSLGWEHYEC HAPEPHILLF KRPLNYEAEL RAATAAAQQQ 120
  121 QQQQQQQQQQ QQQHQTQSIS NDMQVPPQIS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
cyclin-dependent protein kinase regulator activity 3.97841828100668 bayes_pls_golite062009
binding 2.18113207610794 bayes_pls_golite062009
protein binding 1.97943309243131 bayes_pls_golite062009
protein kinase regulator activity 1.37860707665544 bayes_pls_golite062009
kinase regulator activity 1.32978090173102 bayes_pls_golite062009
protein kinase binding 0.944579171364175 bayes_pls_golite062009
kinase binding 0.867010292327918 bayes_pls_golite062009
enzyme binding 0.54410658997703 bayes_pls_golite062009
enzyme regulator activity 0.334428481657021 bayes_pls_golite062009
small conjugating protein binding 0.32298430897304 bayes_pls_golite062009
ubiquitin binding 0.2354005843111 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle