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View Structure Prediction Details

Protein: VMA2
Organism: Saccharomyces cerevisiae
Length: 517 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA2.

Description E-value Query
Range
Subject
Range
ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1
ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti (strain 1021) GN=atpA PE=3 SV=1
0.0 [1..516] [1..504]
ATPA_BRUMB - ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1
ATPA_BRUME - ATP synthase subunit alpha OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) G...
ATPA_BRUME - ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1
0.0 [1..516] [1..504]
ATPA_RHILO - ATP synthase subunit alpha OS=Rhizobium loti GN=atpA PE=3 SV=1
ATPA_RHILO - ATP synthase subunit alpha OS=Rhizobium loti (strain MAFF303099) GN=atpA PE=3 SV=1
0.0 [1..516] [1..504]
gi|25290457, gi|... - pir||AG2898 ATP synthase alpha chain atpA [imported] - Agrobacterium tumefaciens (strain C58, Dupont...
ATPA_AGRFC - ATP synthase subunit alpha OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=atpA PE=3 SV=1
0.0 [1..516] [1..504]
gi|15030240 - gi|15030240|gb|AAH11384.1| ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1,...
0.0 [6..517] [49..548]
ATPA_BOVIN - ATP synthase subunit alpha, mitochondrial OS=Bos taurus GN=ATP5A1 PE=1 SV=1
0.0 [6..517] [49..548]
gi|45383566, gi|... - gi|45383566|ref|NP_989617.1| ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit ...
0.0 [6..517] [49..548]
ATPA_MOUSE - ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1
0.0 [6..517] [49..548]
ATPA_CAUCR - ATP synthase subunit alpha OS=Caulobacter crescentus GN=atpA PE=3 SV=1
ATPA_CAUCR - ATP synthase subunit alpha OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=atpA PE=3 SV=1
ATPA_CAUCN - ATP synthase subunit alpha OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=atpA PE=3 SV=1
0.0 [1..516] [1..505]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSDKELFA INKKAVEQGF NVKPRLNYNT VSGVNGPLVI LEKVKFPRYN EIVNLTLPDG  60
   61 TVRQGQVLEI RGDRAIVQVF EGTSGIDVKK TTVEFTGES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1303.9794
Match: 1fx0A_
Description: F1 ATP synthase alpha subunit, domain 3; F1 ATP synthase alpha subunit, domain 1; Central domain of alpha subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [100-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRIPVSEDML GRIFDGSGRP IDNGPKVFAE DYLDINGSPI NPYARIYPEE MISTGVSAID  60
   61 TMNSIARGQK IPIFSASGLP HNEIAAQICR QAGLVRPTKD VHDGHEENFS IVFAAMGVNL 120
  121 ETARFFKQDF EENGSLERTS LFLNLANDPT IERIITPRLA LTTAEYLAYQ TERHVLTILT 180
  181 DMSSYADALR EVSAAREEVP GRRGYPGYMY TDLSTIYERA GRVEGRNGSI TQIPILTMPN 240
  241 DDITHPIPDL TGYITEGQIF VDRQLHNKGI YPPINVLPSL SRLMKSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1303.9794
Match: 1fx0A_
Description: F1 ATP synthase alpha subunit, domain 3; F1 ATP synthase alpha subunit, domain 1; Central domain of alpha subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [387-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGEGMTRKDH GDVSNQLYAK YAIGKDAAAM KAVVGEEALS IEDKLSLEFL EKFEKTFITQ  60
   61 GAYEDRTVFE SLDQAWSLLR IYPKEMLNRI SPKILDEFYD RARDDADEDE EDPDTRSSGK 120
  121 KKDASQEESL I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1303.9794
Match: 1fx0A_
Description: F1 ATP synthase alpha subunit, domain 3; F1 ATP synthase alpha subunit, domain 1; Central domain of alpha subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle