YRC Public Data Repository - Protein Structure Prediction

Protein:	VID24
Organism:	Saccharomyces cerevisiae
Length:	362 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VID24.

Description	E-value	Query Range	Subject Range
YG29_YEAST - Uncharacterized protein YGR066C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR066C ... gi\|190406912 - gi\|190406912\|gb\|EDV10179.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YGR066C - Putative protein of unknown function gi\|151943345 - gi\|151943345\|gb\|EDN61658.1\| conserved protein [Saccharomyces cerevisiae YJM789]	281.0	[0..121]	[362..77]
gi\|50292631, gi\|... - gi\|50292631\|ref\|XP_448748.1\| unnamed protein product [Candida glabrata], gi\|49528060\|emb\|CAG61711.1\|... gi\|49528060 - gi\|49528060\|emb\|CAG61711.1\| unnamed protein product [Candida glabrata]	276.0	[0..65]	[362..38]
gi\|18676842 - gi\|18676842\|dbj\|BAB85036.1\| unnamed protein product [Homo sapiens]	229.0	[0..118]	[344..117]
gi\|109113504 - gi\|109113504\|ref\|XP_001092897.1\| PREDICTED: similar to Protein C17orf39 homolog [Macaca mulatta]	228.0	[0..118]	[344..117]
gi\|76644084 - gi\|76644084\|ref\|XP_586478.2\| PREDICTED: similar to Protein C17orf39 homolog [Bos taurus]	226.0	[0..118]	[344..227]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINNPKVDSV AEKPKAVTSK QSEQAASPEP TPAPPVSRNQ YPITFNLTST APFHLHDRHR  60
   61 YLQEQDLYKC ASRDSLSSLQ QLAHTPNGST RKKYIVEDQS PYSSE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.298	a.39.1	EF-hand
View	Download	0.298	a.39.1	EF-hand
View	Download	0.293	d.224.1	SufE-like
View	Download	0.277	a.39.1	EF-hand
View	Download	0.245	a.77.1	DEATH domain
View	Download	0.243	a.77.1	DEATH domain
View	Download	0.243	a.77.1	DEATH domain
View	Download	0.237	d.79.2	Tubulin/Dihydroxyacetone kinase C-terminal domain
View	Download	0.232	a.118.8	TPR-like

Predicted Domain #2

Region A:
Residues: [106-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPVIVTSSYN HTVCTNYLRP RMQFTGYQIS GYKRYQVTVN LKTVDLPKKD CTSLSPHLSG  60
   61 FLSIRGLTNQ HPEISTYFEA YAVNHKELGF LSSSWKDEPV LNEFKATDQT DLEHWINFPS 120
  121 FRQLFLMSQK NGLNSTDDNG TTNAAKKLPP QQLPTTPSAD AGNISRIFSQ EKQFDNYLNE 180
  181 RFIFMKWKEK FLVPDALLME GVDGASYDGF YYIVHDQVTG NIQGFYYHQD AEKFQQLELV 240
  241 PSLKNKVESS DCSFEFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits