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View Structure Prediction Details

Protein: RPS11A, RPS11B
Organism: Saccharomyces cerevisiae
Length: 156 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS11A, RPS11B.

Description E-value Query
Range
Subject
Range
RPS11A, RPS11B - Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E...
gi|190408788, gi... - gi|190408788|gb|EDV12053.1| ribosomal protein S11B [Saccharomyces cerevisiae RM11-1a], gi|190405002|...
gi|151942012, gi... - gi|151946439|gb|EDN64661.1| ribosomal protein S11B [Saccharomyces cerevisiae YJM789], gi|151942012|g...
RS11B_YEAST, RS1... - 40S ribosomal protein S11-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS11B PE=1 ...
6.0E-54 [1..156] [1..156]
rps1101, rps1102 - 40S ribosomal protein S11, 40S ribosomal protein S11
RS11B_SCHPO, RS1... - 40S ribosomal protein S11-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps1102 PE=3 S...
4.0E-52 [1..156] [1..152]
gi|13516490, gi|... - gi|71895103|ref|NP_001026004.1| ribosomal protein S11 [Gallus gallus], gi|13516490|dbj|BAB40319.1| r...
4.0E-52 [6..156] [3..158]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-52 [3..155] [1..159]
tr|G3I004|G3I004... - 40S ribosomal protein S11 OS=Cricetulus griseus GN=I79_016673 PE=3 SV=1
tr|M3WAZ1|M3WAZ1... - Ribosomal protein S11 OS=Felis catus GN=RPS11 PE=3 SV=1
RS11_MOUSE - 40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=1 SV=3
tr|G1TRM4|G1TRM4... - pep:novel chromosome:oryCun2:2:132090106:132090582:1 gene:ENSOCUG00000027435 transcript:ENSOCUT00000...
ENSCJAT00000000126 - null
CCDS12769.1_1 - null
gi|114678487, gi... - gi|55624058|ref|XP_517681.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi|1146784...
gi|109125514, gi... - gi|109125516|ref|XP_001115152.1| PREDICTED: similar to ribosomal protein S11 isoform 2 [Macaca mulat...
RPS11 - ribosomal protein S11
RS11_MACFA - 40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3
RS11_BOVIN - 40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3
gi|187609269, gi... - gi|73947970|ref|XP_533619.2| PREDICTED: similar to ribosomal protein S11 [Canis familiaris], gi|1876...
gi|124000091, gi... - gi|60656399|gb|AAX32763.1| ribosomal protein S11 [synthetic construct], gi|124000091|gb|ABM87554.1| ...
RS11_RAT - 40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3
1.0E-51 [6..156] [3..158]
gi|12836870 - gi|12836870|dbj|BAB23843.1| unnamed protein product [Mus musculus]
2.0E-51 [6..145] [3..148]
gi|166867 - gi|166867|gb|AAA32866.1| ribosomal protein S11 (probable start codon at bp 67)
4.0E-51 [2..154] [20..180]
RS11_XENLA - 40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1
6.0E-51 [6..156] [3..158]
gi|2960399 - gi|2960399|dbj|BAA25142.1| 40S ribosomal protein S11 [Cyprinus carpio]
1.0E-50 [6..156] [3..159]
gi|15294033 - gi|15294033|gb|AAK95193.1|AF402819_1 40S ribosomal protein S11 [Ictalurus punctatus]
3.0E-50 [6..156] [3..159]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTELTVQSE RAFQKQPHIF NNPKVKTSKR TKRWYKNAGL GFKTPKTAIE GSYIDKKCPF  60
   61 TGLVSIRGKI LTGTVVSTKM HRTIVIRRAY LHYIPKYNRY EKRHKNVPVH VSPAFRVQVG 120
  121 DIVTVGQCRP ISKTVRFNVV KVSAAAGKAN KQFAKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 347.502279
Match: 1k5xQ_
Description: No description for 1k5xQ_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle