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View Structure Prediction Details

Protein: ATP3
Organism: Saccharomyces cerevisiae
Length: 311 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP3.

Description E-value Query
Range
Subject
Range
gi|148138 - gi|148138|gb|AAA24736.1| ATP synthase gamma subunit [Escherichia coli]
1.0E-93 [33..310] [1..287]
gi|194420428, gi... - gi|83571335|ref|ZP_00922775.1| COG0224: F0F1-type ATP synthase, gamma subunit [Shigella dysenteriae ...
gi|194435837, gi... - gi|83588402|ref|ZP_00927026.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 101-...
ATPG_SHIB3 - ATP synthase gamma chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpG PE=3 SV...
ATPG_ECOHS - ATP synthase gamma chain OS=Escherichia coli O9:H4 (strain HS) GN=atpG PE=3 SV=1
gi|75210657, gi|... - gi|75210657|ref|ZP_00710798.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B171...
gi|190904116, gi... - gi|75230994|ref|ZP_00717429.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli B7A]...
gi|192957494, gi... - gi|75236465|ref|ZP_00720561.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E110...
gi|191170529, gi... - gi|75242479|ref|ZP_00726223.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli F11]...
ATPG_SHIFL - ATP synthase gamma chain OS=Shigella flexneri GN=atpG PE=3 SV=1
gi|24054295, gi|... - gi|24115036|ref|NP_709546.1| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 301], gi|240...
ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpG PE=3...
gi|30064962, gi|... - gi|30064962|ref|NP_839133.1| F0F1 ATP synthase subunit gamma [Shigella flexneri 2a str. 2457T], gi|3...
ATPG_ECO57 - ATP synthase gamma chain OS=Escherichia coli O157:H7 GN=atpG PE=3 SV=1
EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound...
gi|15804333, gi|... - gi|15804333|ref|NP_290372.1| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 EDL933], gi|1...
ATPG_ESCF3 - ATP synthase gamma chain OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=...
ATPG_ECO8A - ATP synthase gamma chain OS=Escherichia coli O8 (strain IAI1) GN=atpG PE=3 SV=1
ATPG_ECO45 - ATP synthase gamma chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpG PE=3 SV=1
ATPG_ECO81 - ATP synthase gamma chain OS=Escherichia coli O81 (strain ED1a) GN=atpG PE=3 SV=1
sp|B7UMJ8|ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1
ATPG_ECO7I - ATP synthase gamma chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpG PE=3 SV=1
ATPG_ECOLU - ATP synthase gamma chain OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpG PE=3 SV=1
gi|195936360 - gi|195936360|ref|ZP_03081742.1| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. EC402...
gi|208727153, gi... - gi|208807352|ref|ZP_03249689.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4206...
gi|208812722, gi... - gi|208812722|ref|ZP_03254051.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4045...
gi|208741481, gi... - gi|208821358|ref|ZP_03261678.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4042...
ATPG_ECO5E - ATP synthase gamma chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpG PE=3 SV=1
gi|254795739, gi... - gi|254795739|ref|YP_003080576.1| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichi...
ATPG_ECOSE - ATP synthase gamma chain OS=Escherichia coli (strain SE11) GN=atpG PE=3 SV=1
gi|254163685, gi... - gi|254163685|ref|YP_003046793.1| F0F1 ATP synthase subunit gamma [Escherichia coli B str. REL606], g...
ATPG_ECO27 - ATP synthase gamma chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpG PE=3 SV=1
gi|254038952, gi... - gi|254038952|ref|ZP_04873004.1| ATP synthase F1 [Escherichia sp. 1_1_43], gi|226838917|gb|EEH70944.1...
gi|217322161, gi... - gi|217325940|ref|ZP_03442024.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. TW1458...
gi|253326676, gi... - gi|254290435|ref|YP_003056183.1| F0F1 ATP synthase subunit gamma [Escherichia coli BL21(DE3)], gi|25...
gi|251786998, gi... - gi|251786998|ref|YP_003001302.1| hypothetical protein B21_03561 [Escherichia coli BL21], gi|24237927...
ATPG_ECOBW - ATP synthase gamma chain OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=atpG PE=3 SV=1
gi|226902798, gi... - gi|237703534|ref|ZP_04534015.1| membrane-bound ATP synthase F1 sector gamma-subunit [Escherichia sp....
gi|227839233, gi... - gi|227883955|ref|ZP_04001760.1| F0F1 ATP synthase subunit gamma [Escherichia coli 83972], gi|2278392...
EG10104 - F1 sector of membrane-bound ATP synthase, gamma subunit / ATP synthase subunit gamma, membrane-bound...
ATPG_ECOL6 - ATP synthase gamma chain OS=Escherichia coli O6 GN=atpG PE=3 SV=1
ATPG_ECOLI - ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1 sector gamma subunit) - Escherichia coli
gi|189369484, gi... - gi|189369484|gb|EDU87900.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4501], g...
gi|168766233, gi... - gi|189364469|gb|EDU82888.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4486], g...
ATPG_ECOUT - ATP synthase gamma chain OS=Escherichia coli (strain UTI89 / UPEC) GN=atpG PE=3 SV=1
gi|187771442, gi... - gi|187771442|gb|EDU35286.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4196], g...
gi|15833929, gi|... - gi|15833929|ref|NP_312702.1| F0F1 ATP synthase subunit gamma [Escherichia coli O157:H7 str. Sakai], ...
gi|168779968, gi... - gi|189002320|gb|EDU71306.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4076], g...
gi|168786576, gi... - gi|189373262|gb|EDU91678.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC869], gi...
gi|168798781, gi... - gi|189378702|gb|EDU97118.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC508], gi...
ATPG_ECODH - ATP synthase gamma chain OS=Escherichia coli (strain K12 / DH10B) GN=atpG PE=3 SV=1
ATPG_ECOSM - ATP synthase gamma chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpG PE=3 SV=1
ATPG_ECOL5 - ATP synthase gamma chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpG PE=3 SV=1
ATPG_SHIF8 - ATP synthase gamma chain OS=Shigella flexneri serotype 5b (strain 8401) GN=atpG PE=3 SV=1
ATPG_ECOK1 - ATP synthase gamma chain OS=Escherichia coli O1:K1 / APEC GN=atpG PE=3 SV=1
gi|124530053, gi... - gi|124530053|ref|ZP_01700836.1| ATP synthase F1, gamma subunit [Escherichia coli B], gi|124499458|gb...
gi|168748537, gi... - gi|188016989|gb|EDU55111.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4113], g...
gi|168753635, gi... - gi|189359205|gb|EDU77624.1| ATP synthase F1, gamma subunit [Escherichia coli O157:H7 str. EC4401], g...
ATPG_ECOLC - ATP synthase gamma chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpG PE=3 SV=...
gi|192930532, gi... - gi|75258272|ref|ZP_00729720.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli E22]...
gi|188493986, gi... - gi|75514201|ref|ZP_00736509.1| COG0224: F0F1-type ATP synthase, gamma subunit [Escherichia coli 5363...
ATPG_SHIDS - ATP synthase gamma chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpG PE=3 SV=1
gi|85676305, gi|... - gi|89110274|ref|AP_004054.1| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichia co...
2.0E-93 [33..310] [1..287]
gi|6625702 - gi|6625702|gb|AAF19361.1|AF188265_7 ATP synthase subunit gamma [Salmonella typhimurium]
gi|6625702|gb|AA... - ATP synthase subunit gamma [Salmonella typhimurium]
2.0E-93 [33..310] [1..287]
ATPG_YERPG - ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Angola) GN=atpG PE=3 SV=1
gi|238759557, gi... - gi|238759557|ref|ZP_04620719.1| ATP synthase gamma chain [Yersinia aldovae ATCC 35236], gi|238702216...
ATPG_YERP3 - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpG PE=3...
gi|229700231, gi... - gi|229896793|ref|ZP_04511956.1| F1 sector of membrane-bound ATP synthase, gamma subunit [Yersinia pe...
gi|229841916, gi... - gi|229841916|ref|ZP_04462072.1| F1 sector of membrane-bound ATP synthase, gamma subunit [Yersinia pe...
gi|229839832, gi... - gi|229839832|ref|ZP_04459991.1| F1 sector of membrane-bound ATP synthase, gamma subunit [Yersinia pe...
gi|22128004, gi|... - gi|22128004|ref|NP_671427.1| F0F1 ATP synthase subunit gamma [Yersinia pestis KIM], gi|21961152|gb|A...
ATPG_YERPE - ATP synthase gamma chain OS=Yersinia pestis GN=atpG PE=3 SV=1
gi|238727474, gi... - gi|77977935|ref|ZP_00833372.1| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia intermedia A...
gi|167049038, gi... - gi|167401656|ref|ZP_02307150.1| ATP synthase F1, gamma subunit [Yersinia pestis biovar Antiqua str. ...
gi|166958219, gi... - gi|167422827|ref|ZP_02314580.1| ATP synthase F1, gamma subunit [Yersinia pestis biovar Orientalis st...
gi|167055524, gi... - gi|167425510|ref|ZP_02317263.1| ATP synthase F1, gamma subunit [Yersinia pestis biovar Mediaevalis s...
ATPG_YERPY - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpG PE=3 SV=...
ATPG_YERPB - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpG PE=3 SV=1
gi|165921957, gi... - gi|165926097|ref|ZP_02221929.1| ATP synthase F1, gamma subunit [Yersinia pestis biovar Orientalis st...
gi|165991565, gi... - gi|166009643|ref|ZP_02230541.1| ATP synthase F1, gamma subunit [Yersinia pestis biovar Antiqua str. ...
gi|166205549, gi... - gi|166213251|ref|ZP_02239286.1| ATP synthase F1, gamma subunit [Yersinia pestis biovar Antiqua str. ...
ATPG_YERPN - ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpG PE=3 SV=1
gi|150260944, gi... - gi|150260944|ref|ZP_01917672.1| ATP synthase gamma subunit protein [Yersinia pestis CA88-4125], gi|1...
ATPG_YERPP - ATP synthase gamma chain OS=Yersinia pestis (strain Pestoides F) GN=atpG PE=3 SV=1
gi|165939971, gi... - gi|89104509|ref|ZP_01177050.1| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia pestis biova...
ATPG_YERPA - ATP synthase gamma chain OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpG PE=3 SV=1
ATPG_YERPS - ATP synthase gamma chain OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=atpG PE=3 SV=...
gi|45443752, gi|... - gi|45443752|ref|NP_995291.1| F0F1 ATP synthase subunit gamma [Yersinia pestis biovar Microtus str. 9...
gi|218931098, gi... - gi|218931098|ref|YP_002348973.1| F0F1 ATP synthase subunit gamma [Yersinia pestis CO92], gi|16124230...
ATPG_YERPS - ATP synthase gamma chain OS=Yersinia pseudotuberculosis GN=atpG PE=3 SV=1
2.0E-92 [33..310] [1..287]
gi|167554379, gi... - gi|205321437|gb|EDZ09276.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
gi|205327338, gi... - gi|205327338|gb|EDZ14102.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
gi|238913119 - gi|238913119|ref|ZP_04656956.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1
gi|200389152, gi... - gi|200389152|ref|ZP_03215764.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ...
gi|204322239, gi... - gi|204928806|ref|ZP_03220005.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ...
ATPG_SALEP - ATP synthase gamma chain OS=Salmonella enteritidis PT4 (strain P125109) GN=atpG PE=3 SV=1
ATPG_SALPC - ATP synthase gamma chain OS=Salmonella paratyphi C (strain RKS4594) GN=atpG PE=3 SV=1
gi|194469716, gi... - gi|194469716|ref|ZP_03075700.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ...
ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1
ATPG_SALSV - ATP synthase gamma chain OS=Salmonella schwarzengrund (strain CVM19633) GN=atpG PE=3 SV=1
ATPG_SALA4 - ATP synthase gamma chain OS=Salmonella agona (strain SL483) GN=atpG PE=3 SV=1
ATPG_SALDC - ATP synthase gamma chain OS=Salmonella dublin (strain CT_02021853) GN=atpG PE=3 SV=1
gi|168464799, gi... - gi|195632150|gb|EDX50634.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
gi|205340521, gi... - gi|205340521|gb|EDZ27285.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
ATPG_SALNS - ATP synthase gamma chain OS=Salmonella newport (strain SL254) GN=atpG PE=3 SV=1
ATPG_SALHS - ATP synthase gamma chain OS=Salmonella heidelberg (strain SL476) GN=atpG PE=3 SV=1
gi|205331686, gi... - gi|205331686|gb|EDZ18450.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
gi|168239810, gi... - gi|197287556|gb|EDY26949.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
gi|168245315, gi... - gi|205335969|gb|EDZ22733.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
gi|168263238, gi... - gi|205348251|gb|EDZ34882.1| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero...
ATPG_SALPB - ATP synthase gamma chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpG PE=3 SV=1
ATPG_SALPB - ATP synthase gamma chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpG PE=3 SV=1
ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpG PE=...
ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis (strain SC-B67) GN=atpG PE=3 SV=1
ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1
ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1
lcl|NC_016856.1_... - [gene=atpG] [protein=F0F1 ATP synthase subunit gamma] [protein_id=YP_005240134.1] [location=compleme...
3.0E-91 [33..310] [1..287]
ATPG_VIBAL - ATP synthase gamma chain OS=Vibrio alginolyticus GN=atpG PE=3 SV=1
2.0E-90 [33..310] [1..288]
gi|213052669 - gi|213052669|ref|ZP_03345547.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
gi|29139584, gi|... - gi|29143948|ref|NP_807290.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica se...
gi|16762460 - gi|16762460|ref|NP_458077.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica se...
ATPG_SALTI - ATP synthase gamma chain OS=Salmonella typhi GN=atpG PE=3 SV=1
ATPG_SALTI - ATP synthase gamma chain OS=Salmonella typhi GN=atpG PE=3 SV=1
gi|214001325 - gi|214001325|ref|ZP_03412060.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
gi|213427469 - gi|213427469|ref|ZP_03360219.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
gi|213586050 - gi|213586050|ref|ZP_03367876.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
gi|213649860 - gi|213649860|ref|ZP_03379913.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
gi|213857969 - gi|213857969|ref|ZP_03384940.1| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...
2.0E-90 [33..310] [1..287]
ATPG_BACMQ - ATP synthase gamma chain OS=Bacillus megaterium (strain ATCC 12872 / QMB1551) GN=atpG PE=3 SV=1
ATPG_BACME - ATP synthase gamma chain OS=Bacillus megaterium GN=atpG PE=3 SV=1
3.0E-90 [33..310] [1..284]
ATPG_PSEA7 - ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain PA7) GN=atpG PE=3 SV=1
ATPG_PSEA8 - ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain LESB58) GN=atpG PE=3 SV=1
ATPG_PSEAB - ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=atpG PE=3 SV=1
gi|194554086, gi... - gi|254243101|ref|ZP_04936423.1| ATP synthase gamma chain [Pseudomonas aeruginosa 2192], gi|194554086...
gi|126169700, gi... - gi|254237769|ref|ZP_04931092.1| ATP synthase gamma chain [Pseudomonas aeruginosa C3719], gi|19454875...
ATPG_PSEAE - ATP synthase gamma chain OS=Pseudomonas aeruginosa GN=atpG PE=3 SV=1
ATPG_PSEAE - ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12...
7.0E-89 [33..310] [1..286]
ATPG_ACIFR - ATP synthase gamma chain OS=Acidithiobacillus ferrooxidans GN=atpG PE=3 SV=1
5.0E-88 [33..308] [1..286]

Back

Predicted Domain #1
Region A:
Residues: [1-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRIVSNNA TRSVMCHQAQ VGILYKTNPV RTYATLKEVE MRLKSIKNIE KITKTMKIVA  60
   61 STRLSKAEKA KISAKKMDEA EQLFYKNAET KNLDVEATET GAPKELIVAI TSDKGLCGSI 120
  121 HSQLAKAVRR HLNDQPNADI VTIGDKIKMQ LLRTHPNNIK LSINGIGKDA PTFQESALIA 180
  181 DKLLSVMKAG TYPKISIFYN DPVSSLSFEP SEKPIFNAKT IEQSPSFGKF EIDTDANVPR 240
  241 DLFEYTLANQ MLTAMAQGYA AEISARRNAM DNASKNAGDM INRYSILYNR TRQAVITNEL 300
  301 VDIITGASSL G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 539.450636
Match: 1bmfG_
Description: ATP synthase (F1-ATPase), gamma subunit
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle