YRC Public Data Repository - Protein Structure Prediction

Protein:	YBR016W
Organism:	Saccharomyces cerevisiae
Length:	128 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBR016W.

Description	E-value	Query Range	Subject Range
orf19.10446, orf... - GSC1 CGDID:CAL0005999 Assembly 19, Contig19-10163 (14363, 8670) CDS, reverse complemented, translate... gi\|46443064, gi\|... - gi\|68469285\|ref\|XP_721157.1\| beta-1,3-glucan synthase [Candida albicans SC5314], gi\|68468741\|ref\|XP_...	139.0	[0..1]	[106..1]
gi\|2274847 - gi\|2274847\|dbj\|BAA21535.1\| beta-1,3-glucan synthase catalytic subunit 1 [Candida albicans]	138.0	[0..1]	[106..1]
gi\|71064019 - gi\|71064019\|gb\|AAZ22447.1\| Gsc2p [Saccharomyces cerevisiae]	112.0	[0..1]	[102..1]
gi\|1491929 - gi\|1491929\|gb\|AAC49993.1\| 1,3-beta-D-glucan synthase catalytic subunit gi\|49092810, gi\|... - gi\|67526543\|ref\|XP_661333.1\| hypothetical protein AN3729.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	106.0	[0..21]	[100..2]
DNAA_STRCH - (Q9ZH75) Chromosomal replication initiator protein dnaA DNAA_STRAQ - Chromosomal replication initiator protein DnaA OS=Streptomyces anulatus GN=dnaA PE=1 SV=1	106.0	[0..5]	[104..126]
gi\|5007025 - gi\|5007025\|gb\|AAD37783.1\|AF148715_1 glucan synthase [Paracoccidioides brasiliensis]	102.0	[0..21]	[108..2]
PP153_ARATH - Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2	97.0	[0..2]	[99..54]
gi\|13509205 - gi\|13509205\|emb\|CAC35209.1\| GRAAL2 protein [Drosophila melanogaster]	88.0	[0..6]	[105..1045]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANDYYGGT AGEKSQYSRP SNPPPSSAHQ NKTQERGYPP QQQQQYYQQQ QQHPGYYNQQ  60
   61 GYNQQGYNQQ GYNQQGYNQQ GYNQQGYNQQ GHQQPVYVQQ QPPQRGNEGC LAACLAALCI 120
  121 CCTMDMLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits