YRC Public Data Repository - Protein Structure Prediction

Protein:	HHF1, HHF2
Organism:	Saccharomyces cerevisiae
Length:	103 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HHF1, HHF2.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-38	[1..103]	[42..145]
H4_MASBA - Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3	9.0E-34	[1..103]	[1..108]
H4_ASCSU - Histone H4 OS=Ascaris suum PE=3 SV=2 gi\|1177238 - gi\|1177238\|emb\|CAA93257.1\| histone H4 [Ascaris lumbricoides]	6.0E-33	[1..103]	[1..103]
H4_SOLST - Histone H4 OS=Solaster stimpsoni PE=3 SV=2	1.0E-32	[1..103]	[1..103]
gi\|12847763 - gi\|12847763\|dbj\|BAB27698.1\| unnamed protein product [Mus musculus]	1.0E-32	[1..103]	[1..103]
gi\|3745758, gi\|3... - gi\|3745762\|pdb\|1AOI\|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp L...	2.0E-32	[17..103]	[1..87]
H4_MYTTR - Histone H4 OS=Mytilus trossulus PE=3 SV=3 tr\|G3H2T6\|G3H2T6... - Histone H4 OS=Cricetulus griseus GN=H671_1g3062 PE=3 SV=1 H4_MYTED - Histone H4 OS=Mytilus edulis PE=3 SV=3 gi\|47225213, gi\|... - gi\|47225213\|emb\|CAF98840.1\| unnamed protein product [Tetraodon nigroviridis], gi\|47225173\|emb\|CAF988... H4_CAIMO - Histone H4 OS=Cairina moschata PE=3 SV=2 H4_ORENI - Histone H4 OS=Oreochromis niloticus PE=3 SV=2 H4_ONCMY - Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2 H4_URECA - Histone H4 OS=Urechis caupo PE=3 SV=2 gi\|55727348 - gi\|55727348\|emb\|CAH90430.1\| hypothetical protein [Pongo abelii] H4_CHICK - Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2 H4_BOVIN - Histone H4 OS=Bos taurus PE=1 SV=2 CCDS4620.1_1, CC... - null, null, null, null, null, null, null, null, null gi\|30268546 - gi\|30268546\|emb\|CAD89677.1\| Xenopus laevis-like histone H4 [Expression vector pET3-H4] H4_XENLA - Histone H4 OS=Xenopus laevis PE=1 SV=2 gi\|114643776, gi... - gi\|55627894\|ref\|XP_527602.1\| PREDICTED: similar to histone H4 [Pan troglodytes], gi\|55625980\|ref\|XP_... gi\|109095780, gi... - gi\|109095780\|ref\|XP_001089711.1\| PREDICTED: similar to germinal histone H4 gene [Macaca mulatta], gi... H4_MOUSE - Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2 ENSCJAT000000428... - null, null, null, null, null, null cds.comp28301_c0... - comp28301_c0_seq1\|g.893 ORF comp28301_c0_seq1\|g.893 comp28301_c0_seq1\|m.893 type:complete len:104 (... H4_PIG - Histone H4 OS=Sus scrofa PE=1 SV=2 H4_XENBO - Histone H4 OS=Xenopus borealis PE=3 SV=2 H4_PLADU - Histone H4 OS=Platynereis dumerilii PE=3 SV=2 H4_CHAVR - Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3 tr\|M3WSM7\|M3WSM7... - Histone H4 OS=Felis catus GN=LOC101084708 PE=3 SV=1 H4_MYTGA - Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3 H4_MYTCA - Histone H4 OS=Mytilus californianus PE=3 SV=3 SINCAMP000000257... - len=103 SINCAMT00000026044 SINCAMG00000016696, len=103 SINCAMT00000026057 SINCAMG00000016709, len=10... gi\|157041201 - gi\|157041201\|dbj\|BAF79670.1\| histone H4 [Hyla japonica] gi\|149731880, gi... - gi\|194210868\|ref\|XP_001917333.1\| PREDICTED: similar to Histone H4 replacement CG3379-PC [Equus cabal... gi\|149617780, gi... - gi\|149624669\|ref\|XP_001507620.1\| PREDICTED: similar to histone H4 [Ornithorhynchus anatinus], gi\|149... HGNC:4785\|MIM:60... - cluster 1, H4k, cluster 2, H4a, cluster 1, H4j gi\|89520691 - gi\|89520691\|gb\|ABD76390.1\| histone H4 [Chlamys farreri] gi\|126309335, gi... - gi\|126313632\|ref\|XP_001364631.1\| PREDICTED: similar to histone H4 [Monodelphis domestica], gi\|126313... H4_XENTR - Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1 gi\|56754981 - gi\|56754981\|gb\|AAW25673.1\| SJCHGC05715 protein [Schistosoma japonicum] gi\|74004197, gi\|... - gi\|74004248\|ref\|XP_854254.1\| PREDICTED: similar to germinal histone H4 gene [Canis familiaris], gi\|7... H4_MACFA - Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE=3 SV=1 H4_RAT - Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2 gi\|71726735 - gi\|71726735\|gb\|AAZ39531.1\| histone H4 [Biomphalaria glabrata] gi\|126540855, gi... - gi\|68442739\|ref\|XP_698975.1\| PREDICTED: similar to Histone H4 replacement CG3379-PC [Danio rerio], g... gi\|215500064, gi... - gi\|67083921\|gb\|AAY66895.1\| hist1h4i protein [Ixodes scapularis], gi\|241568987\|ref\|XP_002402623.1\| hi... gi\|61364560, gi\|... - gi\|61364560\|gb\|AAX42563.1\| histone 2 H4 [synthetic construct], gi\|208966482\|dbj\|BAG73255.1\| Histone ... gi\|542143432\|ref... - PREDICTED: histone H4-like [Zonotrichia albicollis], PREDICTED: histone H4-like [Zonotrichia albicol... gi\|229280927, gi... - gi\|229299031\|gb\|EEN69654.1\| hypothetical protein BRAFLDRAFT_127106 [Branchiostoma floridae], gi\|2292... H4_PONAB - Histone H4 OS=Pongo abelii PE=3 SV=1 gi\|157169165 - gi\|157169165\|gb\|ABV25919.1\| histone H4 [Venerupis pullastra] gi\|157169155 - gi\|157169155\|gb\|ABV25914.1\| histone H4 [Venerupis decussatus] gi\|224094582, gi... - gi\|224152589\|ref\|XP_002192952.1\| PREDICTED: hypothetical protein [Taeniopygia guttata], gi\|224094594... HIST1H4K, HIST1H... - histone cluster 2, H4a, histone cluster 1, H4i, histone cluster 1, H4l, histone cluster 1, H4e, hist... gi\|226372870 - gi\|226372870\|gb\|ACO52060.1\| Histone H4 [Rana catesbeiana] gi\|238661901, gi... - gi\|238661910\|emb\|CAZ32871.1\| histone H4, putative [Schistosoma mansoni], gi\|238661904\|emb\|CAZ32865.1... gi\|294653213\|gb\|... - histone H4 [Citharischius crawshayi]	2.0E-32	[1..103]	[1..103]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKGGKG LGKGGAKRHR KILRDNIQGI TKPAIRRLAR RGGVKRISGL IYEEVRAVLK  60
   61 SFLESVIRDS VTYTEHAKRK TVTSLDVVYA LKRQGRTLYG FGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	357.68867
Match:	1id3B_
Description:	Histone H4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits