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View Structure Prediction Details

Protein: YBL113C
Organism: Saccharomyces cerevisiae
Length: 792 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL113C.

Description E-value Query
Range
Subject
Range
gi|3721904 - gi|3721904|dbj|BAA33739.1| Y'-helicase protein 1 [Saccharomyces cerevisiae]
786.0 [0..190] [792..411]

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Predicted Domain #1
Region A:
Residues: [1-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNQRKEKK GQHVGCCGSR TDLSADTVEL IERMDRLAEN QATASMSIVA LPSSFQESNS  60
   61 SDRCRKYCSS DEDSDTCIHG SANASTNATT NSSTNATTTA SINVRTSATT TASINVRTSA 120
  121 TTTESTNSNT NATTTESTNS STNATTTASI NVRTSATTTE STNSSTNATT TASINVRTSA 180
  181 TTTESTNSST NATTTASINV RTSATTTEST NSNTNASTNA TTNSSTNATT TASTNVRTSA 240
  241 TTNATTNSST NATTTASTNV RTSATTTAST NVRTSATTTA SINVRTSATT TESINSSTNA 300
  301 TTTESTNSNT SATTTESTDS NTNATTTASI NVRTSATTTE STNSNTSATT TESTDSNTSA 360
  361 TTTASTNSST NA

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 14.87
Match:
Description: No description for 1i3qA was found.

Predicted Domain #2
Region A:
Residues: [373-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTASTNSST NATTTESTNA SAKEDANKDG NAEDNRFHPV TDINKESYKR KGSQMVFLER  60
   61 KKLKAQFPNT SENMNVLQFL GFRSDEIKHL FLYGIDIYFC PEGVFTQYGL CKGCQKMFGL 120
  121 CVCWAGQKVS YRRIAWEALA VERMLRNDEE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [523-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKEYLEDIEP YHGDPVGYLK YFSVKRREIY SQIQRNYAWY LAITRRRETI SVLDSTRGKQ  60
   61 GSQVFRMSGR QIKELYYKVW SNLRESKTEV LQYFLNWDEK KCREEWEAKD DTVFVEALEK 120
  121 VGVFQRLRSM TSAGLQGPQY VKLQFSRHHR QLRSRYELSL GMHLRDQLAL GV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [695-792]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSKVPHWTA FLSMLIGLFY NKTFRQKLEY LLEQISEMWL LPHWLDLANV EVLAADNTRV  60
   61 PLYMLMVAVH KELDSDDVPD GRFDIILLCR DSSREVGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle