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View Structure Prediction Details

Protein: YBL108W
Organism: Saccharomyces cerevisiae
Length: 101 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL108W.

Description E-value Query
Range
Subject
Range
YCR103C - YCR103C, Chr III from 305975-306310, reverse complement
166.0 [0..1] [97..1]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMLLFLNES YIFHRFRMWS IVLWHSCVFV CAECGNAYYR GAGGCLEKPF CAPVKFPFSV  60
   61 KKNIRILDLD PRSEAYCLSH HLVCPKRFPC KATSLLLIPE G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.684 a.4.5 "Winged helix" DNA-binding domain
View Download 0.639 b.82.3 cAMP-binding domain-like
View Download 0.567 a.39.1 EF-hand
View Download 0.438 d.15.6 Superantigen toxins, C-terminal domain
View Download 0.438 d.15.6 Superantigen toxins, C-terminal domain
View Download 0.412 a.4.5 "Winged helix" DNA-binding domain
View Download 0.401 b.71.1 Glycosyl hydrolase domain
View Download 0.395 a.4.5 "Winged helix" DNA-binding domain
View Download 0.385 c.47.2 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View Download 0.376 a.7.6 Ribosomal protein S20


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle