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View Structure Prediction Details

Protein: MRP21
Organism: Saccharomyces cerevisiae
Length: 177 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP21.

Description E-value Query
Range
Subject
Range
gi|207347922 - gi|207347922|gb|EDZ73943.1| YBL090Wp-like protein [Saccharomyces cerevisiae AWRI1631]
MRP21 - Mitochondrial ribosomal protein of the small subunit; MRP21 exhibits genetic interactions with mutat...
RT21_YEAST - 37S ribosomal protein MRP21, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...
gi|190408909 - gi|190408909|gb|EDV12174.1| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae...
6.0E-78 [1..177] [1..177]
RT21_SCHPO - 37S ribosomal protein mrp21, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
mrp21 - mitochondrial ribosomal protein subunit Mrp21
2.0E-27 [103..177] [48..121]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSTLRLSR ISLRRGFTTI DCLRQQNSDI DKIILNPIKL AQGSNSDRGQ TSKSKTDNAD  60
   61 ILSMEIPVDM MQSAGRINKR ELLSEAEIAR SSVENAQMRF NSGKSIIVNK NNPAESFKRL 120
  121 NRIMFENNIP GDKRSQRFYM KPGKVAELKR SQRHRKEFMM GFKRLIEIVK DAKRKGY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSGKSIIVNK NNPAESFKRL NRIMFENNIP GDKRSQRFYM KPGKVAELKR SQRHRKEFMM  60
   61 GFKRLIEIVK DAKRKGY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.54
Match: 1vs5U
Description: No description for 1vs5U was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle