YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RPL23B, RPL23A
Organism: Saccharomyces cerevisiae
Length: 137 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL23B, RPL23A.

Description E-value Query
Range
Subject
Range
gi|25295199, gi|... - pir||B86177 hypothetical protein [imported] - Arabidopsis thaliana, gi|2341028|gb|AAB70426.1| Strong...
1.0E-47 [1..137] [21..157]
RL23_MOUSE - 60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=1 SV=1
RL23_PIG - 60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=1 SV=1
gi|149723894 - gi|149723894|ref|XP_001501564.1| PREDICTED: similar to HL23 ribosomal protein [Equus caballus]
gi|89268196, gi|... - gi|89268196|emb|CAJ82654.1| ribosomal protein L23 [Xenopus tropicalis], gi|58332166|ref|NP_001011231...
gi|164690981 - gi|164690981|dbj|BAF98673.1| ribosomal protein L23 [Solea senegalensis]
gi|187609309 - gi|187609309|pdb|2ZKR|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl...
tr|G1T6D1|G1T6D1... - pep:known chromosome:oryCun2:19:40300584:40304272:-1 gene:ENSOCUG00000013915 transcript:ENSOCUT00000...
gi|363743475|ref... - PREDICTED: 60S ribosomal protein L23 isoform 2 [Gallus gallus], PREDICTED: 60S ribosomal protein L23...
ENSCJAT000000162... - null, null
RL23_BOVIN - 60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2
RL23_RAT - 60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1
gi|109114793 - gi|109114793|ref|XP_001084985.1| PREDICTED: similar to 60S ribosomal protein L23 isoform 2 [Macaca m...
RL23_ICTPU - 60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2
gi|206558008 - gi|206558008|gb|ACI12870.1| ribosomal protein L23 [Gillichthys mirabilis]
tr|G3H5W4|G3H5W4... - 60S ribosomal protein L23 OS=Cricetulus griseus GN=I79_005709 PE=3 SV=1
gi|114667757 - gi|114667757|ref|XP_511444.2| PREDICTED: similar to HL23 ribosomal protein isoform 6 [Pan troglodyte...
gi|124000075, gi... - gi|124000075|gb|ABM87546.1| ribosomal protein L23 [synthetic construct], gi|123993085|gb|ABM84144.1|...
RPL23 - ribosomal protein L23
gi|126308182 - gi|126308182|ref|XP_001366590.1| PREDICTED: similar to HL23 ribosomal protein [Monodelphis domestica...
gi|57688 - gi|57688|emb|CAA41177.1| ribosomal protein L23 [Rattus rattus]
CCDS11330.1_1 - null
tr|M3WKT7|M3WKT7... - Ribosomal protein L23 OS=Felis catus GN=RPL23 PE=3 SV=1
4.0E-46 [2..136] [5..139]
rpl-23 - status:Confirmed UniProt:P48158 protein_id:AAK18857.1
gi|39584899, gi|... - gi|39584899|emb|CAE64323.1| Hypothetical protein CBG09001 [Caenorhabditis briggsae], gi|187032197|em...
gi|157773481 - gi|157773481|ref|XP_001664805.1| hypothetical protein CBG09001 [Caenorhabditis briggsae AF16]
CRE04531, FL81_1... - RP20347 WBGene00055611 locus:Cre-rpl-23 status:Confirmed, null
9.0E-46 [2..136] [5..139]
RL23A_SCHPO, RL2... - 60S ribosomal protein L23-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2302 PE=3 S...
rpl2301, rpl2302 - 60S ribosomal protein L23, 60S ribosomal protein L23
2.0E-45 [2..137] [4..139]
gi|12849613 - gi|12849613|dbj|BAB28415.1| unnamed protein product [Mus musculus]
2.0E-45 [2..136] [5..139]
gi|218191803, gi... - gi|218191803|gb|EEC74230.1| hypothetical protein OsI_09417 [Oryza sativa Indica Group], gi|125532288...
gi|37535214, gi|... - gi|50915826|ref|XP_468377.1| 60S ribosomal protein L17 [Oryza sativa (japonica cultivar-group)], gi|...
gi|223532232, gi... - gi|255574915|ref|XP_002528364.1| 60S ribosomal protein L23, putative [Ricinus communis], gi|25557121...
gi|192910886, gi... - gi|192910886|gb|ACF06551.1| 60S ribosomal protein L17 [Elaeis guineensis], gi|192910706|gb|ACF06461....
gi|225438001, gi... - gi|225438001|ref|XP_002273253.1| PREDICTED: similar to ribosomal protein L17 [Vitis vinifera], gi|22...
gi|195607254, gi... - gi|226532932|ref|NP_001149366.1| 60S ribosomal protein L23 [Zea mays], gi|226494003|ref|NP_001148342...
2.0E-45 [2..137] [5..140]
gi|13430182 - gi|13430182|gb|AAK25758.1|AF334838_1 ribosomal protein L17 [Castanea sativa]
3.0E-45 [2..137] [5..140]

Back

Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNGAQGTK FRISLGLPVG AIMNCADNSG ARNLYIIAVK GSGSRLNRLP AASLGDMVMA  60
   61 TVKKGKPELR KKVMPAIVVR QAKSWRRRDG VFLYFEDNAG VIANPKGEMK GSAITGPVGK 120
  121 ECADLWPRVA SNSGVVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 689.9897
Match: 1k5yR_
Description: No description for 1k5yR_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle