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View Structure Prediction Details

Protein: YBL005W-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL005W-A.

Description E-value Query
Range
Subject
Range
YNL284C-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YN11B_YEAST - Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
564.0 [0..1] [435..1]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PIFHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVSTQA NSQQPTTPPS  60
   61 SAVPENHHHA SPQAAQVPLP QNGPYPQQRM MNTQQANISG WPVYGHPSLM PYPPYQMSPM 120
  121 YAPPGAQSQF TQYPQYVGTH LNTPSPESGN SFPDSSSAKS NMTSTNQHVR PPPILTSPND 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 74.455932
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [181-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLNWVKIYIK FLQNSNLGDI IPTATRKAVR QMTDDELTFL CHTFQLFAPS QFLPPWVKDI  60
   61 LSVDYTDIMK ILSKSINKMQ SDTQEVNDIT TLATLHYNGS TPADAFEAEV TNILDRLNNN 120
  121 GIPINNKVAC QFIMRGLSGE YKFLPYAR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.561 a.118.8 TPR-like
View Download 0.506 a.23.2 Diol dehydratase, gamma subunit
View Download 0.506 a.23.2 Diol dehydratase, gamma subunit
View Download 0.465 a.118.8 TPR-like
View Download 0.465 a.118.8 TPR-like
View Download 0.441 d.95.2 Homing endonucleases
View Download 0.430 a.118.8 TPR-like
View Download 0.430 a.118.8 TPR-like
View Download 0.423 d.95.2 Homing endonucleases
View Download 0.406 d.95.2 Homing endonucleases

Predicted Domain #3
Region A:
Residues: [329-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRCIHMTVAD LFSDIHSMYE EQQESKRNKS TYRRSPSDEK KDSRTYTNTT KPKSITRNSQ  60
   61 KPNNSQSRTA RAHNVSTFNN SPGPDNDLIR GSTTEPIQLK NTHDLHLRPG TY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.442 N/A N/A d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.411 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.374 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.369 N/A N/A a.24.17 Group V grass pollen allergen
View Download 0.349 N/A N/A d.79.1 YjgF-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle