YRC Public Data Repository - Protein Structure Prediction

Protein:	YAR075W
Organism:	Saccharomyces cerevisiae
Length:	157 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAR075W.

Description	E-value	Query Range	Subject Range
IMD4 - Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-... IMDH4_YEAST - Inosine-5'-monophosphate dehydrogenase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	1.0E-59	[9..157]	[376..524]
IMPDH1 - IMP (inosine 5'-monophosphate) dehydrogenase 1	4.0E-59	[5..156]	[368..514]
IMDH2_CRIGR - Inosine-5'-monophosphate dehydrogenase 2 OS=Cricetulus griseus GN=IMPDH2 PE=1 SV=1	1.0E-58	[5..156]	[368..514]
IMDH2_MOUSE - Inosine-5'-monophosphate dehydrogenase 2 OS=Mus musculus GN=Impdh2 PE=1 SV=2	2.0E-58	[5..156]	[368..514]
IMDH_CANAL - Inosine-5'-monophosphate dehydrogenase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IMH3 P... IMDH_CANAX - Inosine-5'-monophosphate dehydrogenase OS=Candida albicans GN=IMH3 PE=2 SV=1	7.0E-58	[9..157]	[373..521]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVFKNIGHI ITKALALGSS TVMMGGMLAG TTESPGEYLY QDGKRLKAYR GMGSIDAMQK  60
   61 TGTKGNASTS RYFSESDSVL VAQGVSGAVV DKGSIKKFIP YLYNGLQHSC QDIGCRSLTL 120
  121 LKENVQSGKV RFEFRTASAQ LEGGVNNLHS YEKRLHN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	569.758605
Match:	1b3oA_
Description:	Inosine monophosphate dehydrogenase (IMPDH)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits