YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SWH1
Organism: Saccharomyces cerevisiae
Length: 256 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWH1.

Description E-value Query
Range
Subject
Range
ANK2 - ankyrin 2, neuronal
9.0E-67 [1..255] [284..555]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-66 [1..255] [286..557]
gi|3885972 - gi|3885972|gb|AAC78143.1| 270 kDa ankyrin G isoform [Rattus norvegicus]
6.0E-63 [1..255] [294..565]

Back

Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQPDLSSVA ISKPLLKLKL LDALRQGSFP NLQDLLKKQF QPLDDPNVQQ VLHLMLHYAV  60
   61 QVAPMAVIKE IVHHWVSTTN TTFLNIHLDL NERDSNGNTP LHIAAYQSRG DIVAFLLDQP 120
  121 T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.154902
Match: 1k1aA_
Description: bcl-3
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [122-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INDCVLNNSH LQAIEMCKNL NIAQMMQVKR STYVAETAQE FRTAFNNRDF GHLESILSSP  60
   61 RNAELLDING MDPETGDTVL HEFVKKRDVI MCRWLLEHGA DPFKRDRKAN CPSSSLGKSM 120
  121 KTTPPPAPRS PSTSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.154902
Match: 1k1aA_
Description: bcl-3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle