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View Structure Prediction Details

Protein: PRM9
Organism: Saccharomyces cerevisiae
Length: 298 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM9.

Description E-value Query
Range
Subject
Range
gi|45720158 - gi|45720158|emb|CAE52450.1| Prm9p [Saccharomyces cerevisiae]
475.0 [0..1] [298..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQYHFYFV SFRNLVLNEK CLRSKKQVMK SFNWYKTDRY FDPHNILQHH SRAIEKTRYK  60
   61 LGMQTSSEST DAKSDFLDEP SAYLIEKNVA LPKDIFGSYL SYWIYEVTRH KAAVILLVLI 120
  121 VTSIL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [126-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLVFFYNTEF CVAFEILLFS FCFPGTCMVV IAFSEPIGDR EFKVKLLMEI ITRKPAVKGK  60
   61 EWRTITYKMN QYLFDHGLWD TPYYFYRDED CHRYFLSLIK GRTFKKQKES SASNVKDAQS 120
  121 NDETAGTPNE AAESSSFSAG PNFIKLLTKA AEIEQQFQKE YWRQEYPGVD EFF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 53.744727
Match: PF00674
Description: DUP family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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