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View Structure Prediction Details

Protein: YPR137C-A, YAR010C
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR137C-A, YAR010C.

Description E-value Query
Range
Subject
Range
YNL054W-B - TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req...
YN12B_YEAST - Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
526.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQTAQSHSP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.318759
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSDMTSTKK YVRPPPMLTS PNDFPNWVKT YIKFLQNSNL GGIIPTVNGK PVRQITDDEL  60
   61 TFLYNTFQIF APSQFLPTWV KDILSVDYTD IMKILSKSIE KMQSDTQEAN DIVTLANLQY 120
  121 NGSTPADAFE TKVTNIIDRL NNNGIHINNK VACQLIMRGL SGEYKFLRYT RH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [330-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHLNMTVAEL FLDIHAIYEE QQGSRNSKPN YRRNPSDEKN DSRSYTNTTK PKVIARNPQK  60
   61 TNNSKSKTAR AHNVSTSNNS PSTDNDSISK STTEPIQLNN KHDLHLRPET Y

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle