| Protein: | SEN34 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 275 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN34.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-88 | [1..275] | [1..275] |
|
|
2.0E-78 | [4..274] | [12..309] |
|
|
3.0E-69 | [4..274] | [12..315] |
|
|
6.0E-67 | [4..275] | [16..284] |
|
|
4.0E-32 | [162..273] | [69..179] |
|
|
3.0E-29 | [131..258] | [210..333] |
|
Region A: Residues: [1-149] |
1 11 21 31 41 51
| | | | | |
1 MPPLVFDIDH IKLLRKWGIC GVLSGTLPTA AQQNVFLSVP LRLMLEDVLW LHLNNLADVK 60
61 LIRQEGDEIM EGITLERGAK LSKIVNDRLN KSFEYQRKFK KDEHIAKLKK IGRINDKTTA 120
121 EELQRLDKSS NNDQLIESSL FIDIANTSM
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.338 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.338 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.353 | a.7.4 | Smac/diablo |
| View | Download | 0.343 | a.7.1 | Spectrin repeat |
| View | Download | 0.402 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.353 | a.7.4 | Smac/diablo |
| View | Download | 0.366 | a.24.1 | Apolipoprotein |
| View | Download | 0.343 | a.7.1 | Spectrin repeat |
| View | Download | 0.402 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.366 | a.24.1 | Apolipoprotein |
| View | Download | 0.327 | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.298 | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.259 | a.4.12 | TrpR-like |
| View | Download | 0.252 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.245 | a.25.1 | Ferritin-like |
| View | Download | 0.223 | d.110.4 | SNARE-like |
| View | Download | 0.203 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.200 | c.55.1 | Actin-like ATPase domain |
|
Region A: Residues: [150-275] |
1 11 21 31 41 51
| | | | | |
1 ILRDIRSDSD SLSRDDISDL LFKQYRQAGK MQTYFLYKAL RDQGYVLSPG GRFGGKFIAY 60
61 PGDPLRFHSH LTIQDAIDYH NEPIDLISMI SGARLGTTVK KLWVIGGVAE ETKETHFFSI 120
121 EWAGFG
|
| Detection Method: | |
| Confidence: | 26.045757 |
| Match: | 1a79A_ |
| Description: | tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain |
Matching Structure (courtesy of the PDB): |
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