YRC Public Data Repository - Protein Structure Prediction

Protein:	FUN19
Organism:	Saccharomyces cerevisiae
Length:	463 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUN19.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..422]	[1..422]
gi\|207340855 - gi\|207340855\|gb\|EDZ69077.1\| YOR338Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407633 - gi\|190407633\|gb\|EDV10900.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YO338_YEAST - SWIRM domain-containing protein YOR338W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... YOR338W - Putative protein of unknown function; YOR338W transcription is regulated by Azf1p and its transcript...	0.0	[50..463]	[4..363]
LAF1_SCHPO - SWIRM domain-containing protein laf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=laf1 ... SPAC14C4.12c - SWIRM domain protein	1.0E-59	[257..456]	[103..297]
gi\|3335553 - gi\|3335553\|gb\|AAC39902.1\| ADA2-like protein [Homo sapiens]	3.0E-26	[352..454]	[268..360]
gi\|19343571 - gi\|19343571\|gb\|AAH25448.1\| Tada2l protein [Mus musculus]	8.0E-25	[352..454]	[217..309]
gi\|18101632 - gi\|18101632\|gb\|AAL14200.2\| transcriptional adaptor-like protein [Hypocrea jecorina]	7.0E-22	[373..454]	[431..511]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCRGLSRTP FFLREPLIKV ATWFITSPLW LIHWASINRI FAHRNIYRGN MGLYSPESEK  60
   61 SQLNMNYIGK DDSQSIFRRL NQNLKASNNN NDSNKNGLNM SDYSNNSPYG RSYDVRINQN 120
  121 SQNNGNGCFS GSIDSLVDEH IIPSPPLSPK LESKISHNGS PRMASSVLVG STPKGAVENV 180
  181 LFVKPVWPNG LSRKRYRYAT YGFLSQYKIF SNLAQPYSKN IINRYNN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-305]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAYNARHKYS KYNDDMTPPP LPSSSSRLPS PLASPNLNRQ ARYNMRKQAL YNNNLGKFES  60
   61 DTEWIPRKRK VYSPQRRT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [306-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSPHRAKK FSPSASTPHT NIASIEAIHD APQYIPNVSW KKLPDYSPPL STLPTDSNKS  60
   61 LKIEWKGSPM DLSTDPLRNE LHPAELVLAQ TLRLPCDLYL DSKRRLFLEK VYRLKKGLPF 120
  121 RRTDAQKACR IDVNKASRLF QAFEKVGWLQ DSNFTKYL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits