YRC Public Data Repository - Protein Structure Prediction

Protein:	VAR1
Organism:	Saccharomyces cerevisiae
Length:	398 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAR1.

Description	E-value	Query Range	Subject Range
gi\|13611, gi\|3452511 - gi\|3452511\|emb\|CAA09218.1\| Var1u ribosomal protein [Saccharomyces cerevisiae], gi\|13611\|emb\|CAA24077...	256.0	[0..1]	[398..1]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLLNMIL SMMNKTNNNN NIIINNTLDS LMNKKLLLKN MLLDMNNKKM NNMKRMLNNN  60
   61 NMNPAGANPV VHRIGPAGNI NNKLQHLNNM NNWNTQIYNY NKNMEIMNTM NDKLINKLLY 120
  121 KMMTLKLNNM NINKIIMSKT INQHSLNKLN IKFYYYNNDI NNNNNNNNNN YYMNMMNKLM 180
  181 NIMNNNMNNN LCNILSYYYK KKVTIEPIKL SYIYLNSDIF SKYISLNDMD KYNNGILTNY 240
  241 QRMLNNIMPK LNDHNISMNY INNINNINNN KYNNMINLLN NNNNINNNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [290-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYNNNNNNYI GNINNIYNNM TIDNIPMDIL MYKYLVGWSI KFKGRLSNNN GRTSTTNLLN  60
   61 GTFNNKKYLW SNINNNYKLN YIPSNHNLYN NSNINKNGKY NIKVKLNFI