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View Structure Prediction Details

Protein: NRPE1_ARATH
Organism: Arabidopsis thaliana
Length: 1976 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for NRPE1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-1495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC  60
   61 GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK CLKIKKAKGT SGGLADRLLG 120
  121 VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV 180
  181 KEILRRIPEE SRKKLTAKGH IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK 240
  241 DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD 300
  301 SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR 360
  361 GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV HRRVMDGDVV FINRPPTTHK 420
  421 HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL 480
  481 SSHTGQLILQ MGSDSLLSLR VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT 540
  541 VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF 600
  601 FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE 660
  661 NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG FLGLQLSDKK KFYTKTLVED 720
  721 MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK 780
  781 NLMAVLRDIV ITNDGTVRNT CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA 840
  841 YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR 900
  901 NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC 960
  961 EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG SDMPCLTFSY NATDPDLERT1020
 1021 LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA1080
 1081 VKQSGDAWRV VIDSCLSVLH LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS1140
 1141 KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK1200
 1201 CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD1260
 1261 AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ NLHDEGKPSG ANWEKSSSWD1320
 1321 NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI1380
 1381 KTKDADADTT PNWETSPAPK DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG1440
 1441 STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [1496-1976]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATWGSSDKTK SGAAAWNSWD KKNIETDSEP AAWGSQGKKN SETESGPAAW GAWDKKKSET  60
   61 EPGPAGWGMG DKKNSETELG PAAMGNWDKK KSDTKSGPAA WGSTDAAAWG SSDKNNSETE 120
  121 SDAAAWGSRN KKTSEIESGA GAWGSWGQPS PTAEDKDTNE DDRNPWVSLK ETKSREKDDK 180
  181 ERSQWGNPAK KFPSSGGWSN GGGADWKGNR NHTPRPPRSE DNLAPMFTAT RQRLDSFTSE 240
  241 EQELLSDVEP VMRTLRKIMH PSAYPDGDPI SDDDKTFVLE KILNFHPQKE TKLGSGVDFI 300
  301 TVDKHTIFSD SRCFFVVSTD GAKQDFSYRK SLNNYLMKKY PDRAEEFIDK YFTKPRPSGN 360
  361 RDRNNQDATP PGEEQSQPPN QSIGNGGDDF QTQTQSQSPS QTRAQSPSQA QAQSPSQTQS 420
  421 QSQSQSQSQS QSQSQSQSQS QSQSQSQSQS QSPSQTQTQS PSQTQAQAQS PSSQSPSQTQ 480
  481 T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle