YRC Public Data Repository - Protein Structure Prediction

Protein:	RM35_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM35_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32414865, gi\|... - gi\|32414865\|ref\|XP_327912.1\| hypothetical protein [Neurospora crassa], gi\|28917826\|gb\|EAA27514.1\| hy... gi\|85081594 - gi\|85081594\|ref\|XP_956750.1\| hypothetical protein [Neurospora crassa OR74A]	276.0	[0..79]	[368..97]
gi\|38566839 - gi\|38566839\|emb\|CAE76145.1\| related to ribosomal protein YmL35 [Neurospora crassa]	275.0	[0..79]	[368..73]
gi\|46130894, gi\|... - gi\|46130894\|ref\|XP_389178.1\| hypothetical protein FG09002.1 [Gibberella zeae PH-1], gi\|42554517\|gb\|E...	258.0	[0..78]	[368..97]
gi\|38103565, gi\|... - gi\|39943992\|ref\|XP_361533.1\| hypothetical protein MGG_04007 [Magnaporthe grisea 70-15], gb\|EAA50248....	245.0	[0..78]	[367..147]
gi\|40739051, gi\|... - gi\|67541344\|ref\|XP_664446.1\| hypothetical protein AN6842.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	242.0	[0..78]	[369..105]
RM35_YEAST - 54S ribosomal protein L35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942298 - gi\|151942298\|gb\|EDN60654.1\| YmL35 [Saccharomyces cerevisiae YJM789] MRPL35 - Mitochondrial ribosomal protein of the large subunit	241.0	[0..72]	[355..49]
gi\|90298442, gi\|... - gi\|90298442\|gb\|EAS28073.1\| hypothetical protein CIMG_09277 [Coccidioides immitis RS], gi\|119174601\|r...	239.0	[0..78]	[369..106]
gi\|21315011 - gi\|21315011\|gb\|AAH30739.1\| Mitochondrial ribosomal protein L38 [Mus musculus]	237.0	[0..78]	[369..18]
gi\|114195250, gi... - gi\|115387321\|ref\|XP_001211166.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	234.0	[0..78]	[369..106]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLFQLTCL TSTVSISNFI LYNRKYRKSC ALAFLTLRYT LLCYSIPIHI HTVNYLAFTI  60
   61 ARMKRVWPRI PTISNVCRAR SIYSAAQENA YRSSVKLIQE YSEKVHKKLQ AKLLENPSET 120
  121 SPEIERLQVL SQINLPEVRS KFHKKEIDYT NPVFLYMLKQ QWEDY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [166-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKLLLLQRLE QMKVIKDSGI GSFSPSVDVQ LGFNPENNDS ITPGTILPST VTVKTPWLSV  60
   61 LPFNCKKNHY SVITLDLDVP NYETNRFETH CNWLLTNIPI EASKRVPIDT SKAFFQYRPP 120
  121 IVHRGEDKHR ILTLVLRQKS SSISIPSNAL VRERFDLSEF CSIYDLEPVG AHLWRSGWDS 180
  181 DAVALLSKHP SVHEYRDIRV ERIPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	1wkoA
Description:	terminal flower 1 (tfl1) from arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits