YRC Public Data Repository - Protein Structure Prediction

Protein:	HPM1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HPM1_SCHPO.

Description	E-value	Query Range	Subject Range
C1orf156 - chromosome 1 open reading frame 156	247.0	[0..11]	[323..80]
gi\|114565293, gi... - gi\|55588778\|ref\|XP_524959.1\| PREDICTED: hypothetical protein MGC9084 isoform 3 [Pan troglodytes], gi...	242.0	[0..11]	[323..80]
MET18_RAT - Histidine protein methyltransferase 1 homolog OS=Rattus norvegicus GN=Mettl18 PE=2 SV=1	239.0	[0..7]	[323..55]
gi\|42545193, gi\|... - gi\|46108946\|ref\|XP_381531.1\| hypothetical protein FG01355.1 [Gibberella zeae PH-1], gi\|42545193\|gb\|E...	235.0	[0..6]	[317..3]
gi\|67521976, gi\|... - gi\|67521976\|ref\|XP_659049.1\| hypothetical protein AN1445.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	235.0	[0..3]	[321..2]
gi\|39974657, gi\|... - gi\|39974657\|ref\|XP_368719.1\| hypothetical protein MGG_00525 [Magnaporthe grisea 70-15], gb\|EAA48867....	234.0	[0..3]	[317..2]
gi\|85116968 - gi\|85116968\|ref\|XP_965149.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926953, gi\|... - gi\|38567028\|emb\|CAE76326.1\| conserved hypothetical protein [Neurospora crassa], gi\|32409311\|ref\|XP_3...	234.0	[0..3]	[317..2]
MET18_BOVIN - Histidine protein methyltransferase 1 homolog OS=Bos taurus GN=METTL18 PE=2 SV=1	231.0	[0..7]	[323..78]
gi\|109019452, gi... - gi\|109019454\|ref\|XP_001096407.1\| PREDICTED: similar to RIKEN cDNA 2810422O20 isoform 2 [Macaca mulat...	231.0	[0..11]	[323..80]
gi\|12850313 - gi\|12850313\|dbj\|BAB28672.1\| unnamed protein product [Mus musculus]	231.0	[0..11]	[323..75]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQANGFSFGF YDEPNNLNGQ DVGADSLPSV AIESDSLGHM LKYIPEKLSY ARVSGLGHTF  60
   61 VQRELWDVKM QLMEQDDSIE SDDKLKVLDG CNDLVPNVYE GG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKTWECSLDL ANEIKKIDVV KNNLTTVLEL GCGSAIPILS CFQEFYKHRI PCTLVFQDFN  60
   61 VDVLRYVTLP NLLLNWYFCT QEHDSSEKHG TIDVSPSLLQ EFSDDLARTN IYCEFLCGCW 120
  121 SEEMQLLIQR T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	2v74B
Description:	No description for 2v74B was found.

Predicted Domain #3

Region A:
Residues: [234-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGDHYFSLVL ASETIYSLPS LENFLYMLLK NTKNLALVAG KDLYFGVGGS ILEFNSRLQK  60
   61 LVDDPNSLKA IKTSTQNVGR SIVYWEKEFP PSNIDSSPQS PLPGSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits