YRC Public Data Repository - Protein Structure Prediction

Protein:	YI26_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	583 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YI26_SCHPO.

Description	E-value	Query Range	Subject Range
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	337.0	[0..3]	[583..39]
AGP1_YEAST - General amino acid permease AGP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGP1 PE... AGP1 - Low-affinity amino acid permease with broad substrate range, involved in uptake of asparagine, gluta...	331.0	[0..3]	[583..39]
SPBC359.01 - amino acid permease, unknown 7 YH81_SCHPO - Uncharacterized amino-acid permease C359.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	331.0	[0..1]	[583..1]
YI0B_SCHPO - Uncharacterized amino-acid permease C869.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAC869.11 - amino acid permease, unknown 6	331.0	[0..9]	[583..2]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	325.0	[0..4]	[583..16]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	323.0	[0..16]	[583..81]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	322.0	[0..1]	[583..29]

Back

Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPDRSIDI DLEKYPSTAT KSVYGQSKDD KNVFDIHPTE SEVIPGEVEY ADTPSHQNFL  60
   61 QKFFSDFKPV KAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [74-583]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REDGVALKRH LKGRHMQMIA IGGAIGTGLF VGSGSSLADG GPASVIIDYT LIGIMMFFTV  60
   61 YALGELAVSY PVAGGFYNYA VRFIDPAWGF AVGWNYFMNY FVTFPLELTT CAITFRYWTD 120
  121 INSCAWITIF LVFVICINLF GVRGYGEVEF ILSTLKVVAT TGFIILAIII NCGGVPTDPR 180
  181 GYIGGKIIKN KPFRHSFKGF CSVFTTAGFS FSGTEVVGLA AAEAEDPQKS LPRATKQVFW 240
  241 RIAIFYVVSL ILIGLLVSPD DPRLMGNSSD GSTSPFVLAI KEANIRGLPS VFNAVIIIST 300
  301 VSVANSCTFT ASRTLHAMAA KGDAPRFFAY TDRLGRPLLA MAVCLLFGFF AYINAAGDVS 360
  361 DTVFDWLLAI SGISNFFSWG SINLCHIVFR LAMKKQGRSL DQLGFVSPMG IWGSAIGLAF 420
  421 NILCLMAEFY VSLFPIGSKP NANDFFQGYL AAPIVIAFFI GYKIYDRSHI PSLSKLDLDT 480
  481 GLRTYPPKDK ESEKIRDAKG FFKWIWQSLC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.68
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits