YRC Public Data Repository - Protein Structure Prediction

Protein:	PAF1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAF1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|123981872, gi... - gi\|123996701\|gb\|ABM85952.1\| Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) [synt... PAF1 - Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	442.0	[0..4]	[431..24]
PAF1_PONAB - RNA polymerase II-associated factor 1 homolog OS=Pongo abelii GN=PAF1 PE=2 SV=1 gi\|55728701 - gi\|55728701\|emb\|CAH91090.1\| hypothetical protein [Pongo abelii]	440.0	[0..4]	[431..24]
PAF1_MOUSE - RNA polymerase II-associated factor 1 homolog OS=Mus musculus GN=Paf1 PE=1 SV=1	440.0	[0..4]	[431..24]
PAF1_RAT - RNA polymerase II-associated factor 1 homolog OS=Rattus norvegicus GN=Paf1 PE=2 SV=1	439.0	[0..4]	[431..24]
tr\|M3WDU4\|M3WDU4... - PAF1 homolog, Paf1/RNA polymerase II complex component OS=Felis catus GN=PAF1 PE=4 SV=1 gi\|73947660 - gi\|73947660\|ref\|XP_533675.2\| PREDICTED: similar to Paf1, RNA polymerase II associated factor, homolo...	437.0	[0..4]	[431..24]
PAF1_BOVIN - RNA polymerase II-associated factor 1 homolog OS=Bos taurus GN=PAF1 PE=2 SV=1	436.0	[0..4]	[431..24]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQENRRQDYI LRVRYHNPLP PPPFPPKLIN IPNPVKQYAL PNFVSTLVQE KKIPIENDIE  60
   61 LGMPLDLAGI TGFFEGDTSW MHSDLSSVNL DPIDRSLLKV AGGSGSTHLE VPFLRRTEYI 120
  121 SSEVARAASN RGNLRLTAST SKALAEQRGR SLREVPKQLE AINESFDVVQ QPLEQLKHPT 180
  181 KPDLKPVSAW NLLPNTSMAG IQHLMLRVAD DLSERSHSYS SLVNLQEGHN LTKRHEVALF 240
  241 MPSSAEGEEF LSYYLPSEET AEEIQAKVND AS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [273-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADVHEPFVYN HFRNFDASMH VNSTGLEDLC LTFHTDKDHP EANQVLYTPI YARSTLKRRH  60
   61 VRAPVSLDAV DGIELSLRDL NDEESLQLKR ARYDTFGLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [372-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIKDLEEEEE KLRSVEGSLN EELSEEEKPA ESREQLESAE QTNGVKPETQ AQNMSASESQ  60
   61 ANSPAPPVEE GNTQPSPVEQ LQNEED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits