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View Structure Prediction Details

Protein: MER3_ARATH
Organism: Arabidopsis thaliana
Length: 1133 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for MER3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-749]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC  60
   61 ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD WNQKFNSWGI SCLELTGDNE 120
  121 TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA 180
  181 IVSRLKILSS NHELRSSTLA SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL 240
  241 TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT 300
  301 YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD 360
  361 IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD RSTLLQMSGR AGRPPFDDTG 420
  421 MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL 480
  481 YVRMKKNPEN YAIKKGIPKD RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL 540
  541 MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL 600
  601 RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK 660
  661 EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI GMVTAKALHS MGVRSFEALA 720
  721 EADPRRIEIV TGRKYPFGNT IKESLSSLP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 2va8A
Description: No description for 2va8A was found.

Predicted Domain #2
Region A:
Residues: [750-857]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKVEIKVEEV DCQKQGISKL AVTLSRVSQP LQSTKRHYAD LIVGSEEENL IHFHEKIRME  60
   61 DFSSPYSVTV LLERPHQQTK VTVKADLIFE EYIGIDLHET LLLKKANN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.154902
Match: 2q0zX
Description: No description for 2q0zX was found.

Predicted Domain #3
Region A:
Residues: [858-1133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKVNYKSENR MPQYYPPMAS ACIADDDNPV TSGPSNRKDK KDDMPSFKLI DDDSEEEKEP  60
   61 YVTMEEDDCV IINEHTVFDH IREKAKCFPS LNPLNPTSSP ASGKSILKRK SLVENNSPEL 120
  121 DPLFQYDSVF DLPTNTKDIK QSAQQITSPG YASFAEKTET ERPFSDETIF NYIRKRSKNS 180
  181 PALATSKIEN PITISSQEGR NAEISPYRTY GLLVSPATKI PRITSDAPSE ILSFDISMVK 240
  241 RSDTSLEQTK GFCSTLAGKS NVSDSFLGFK SIFSFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle