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View Structure Prediction Details

Protein: PR38A_BOVIN
Organism: Bos taurus
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PR38A_BOVIN.

Description E-value Query
Range
Subject
Range
gi|47212452 - gi|47212452|emb|CAF94104.1| unnamed protein product [Tetraodon nigroviridis]
2.0E-72 [1..221] [1..221]
gi|55234188, gi|... - gi|58396598|ref|XP_322016.2| ENSANGP00000012048 [Anopheles gambiae str. PEST], gi|55234188|gb|EAA010...
2.0E-70 [1..249] [1..244]
gi|62649400, gi|... - gi|62649400|ref|XP_216475.2| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast) domai...
4.0E-69 [1..312] [1..312]
gi|26344816, gi|... - gi|27370014|ref|NP_766285.1| PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Mus mu...
5.0E-69 [1..312] [1..312]
gi|157763134 - gi|157763134|ref|XP_001673909.1| Hypothetical protein CBG09713 [Caenorhabditis briggsae AF16]
gi|187031618, gi... - gi|39593428|emb|CAE64898.1| Hypothetical protein CBG09713 [Caenorhabditis briggsae], gi|187031618|em...
1.0E-68 [1..195] [1..195]
gi|47937532 - gi|47937532|gb|AAH72106.1| LOC432312 protein [Xenopus laevis]
2.0E-68 [2..221] [9..227]
gi|109004796 - gi|109004796|ref|XP_001111695.1| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast) d...
4.0E-68 [1..312] [1..312]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRTVKDAH SIHGTNPQYL VEKIIRTRIY ESKYWKEECF GLTAELVVDK AMELRFVGGV  60
   61 YGGNIKPTPF LCLTLKMLQI QPEKDIIVEF IKNEDFKYVR MLGALYMRLT GTAIDCYKYL 120
  121 EPLYNDYRKI KSQNRNGEFE LMHVDEFIDE LLHSERVCDI ILPRLQKRYV LEEAEQLEPR 180
  181 V

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 76.69897
Match: PF03371.6
Description: No description for PF03371.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [182-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SALEEDMDDV ESSEEEEEED EKLERVPSPD HRRRSYRDLD KPRRSPTLRY RRSRSRSPRR  60
   61 RSRSPKRRSP SPRRERHRSK SPRRHRSRSR DRRHRSRSKS PGHHRSHRHR SHSKSPERSK 120
  121 KSHKKSRRGN E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle