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View Structure Prediction Details

Protein: CG11788-PA
Organism: Drosophila melanogaster
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11788-PA.

Description E-value Query
Range
Subject
Range
gi|56201304 - gi|56201304|dbj|BAD72906.1| unnamed protein product [Drosophila simulans]
gi|56201323 - gi|56201323|dbj|BAD72924.1| unnamed protein product [Drosophila sechellia]
493.0 [0..1] [393..1]

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Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESMEVDESA AQLYVRTPED VKAIVKHAKL DERQLTQLTQ ALYFPSADVD SDNLRLLELD  60
   61 GHMLGQIRDG QTLYFKGGQN EKLVLCTDER TYDVKGAEIS NSLLLVPDLK FAAATSTSPL 120
  121 KSPRTGNANA SLERSLNDST EDELEVPRTL EQRPVLKVFH EYFECREIKP RFRKLGELLQ 180
  181 LTRYSGPENE FCVEQKLLFT FSQLLDTVQC SRGQFMEGLN QYRAIELD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [229-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRMRVMEYEY EYRIINMMLG LISENSWALD EVEREETINA LKGIAPEDVV AGLFDIYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPSERCPGKF EYQESLVSRI VAQNILQPGL RFRNEEFMRT WQEVLPEGMS CDLKYLRGLG  60
   61 ICDKEGAQPC IRSLAEELLP TNISDRMRAL FKTKKRWTME EMEPYIECFT TPNLSVSTLL 120
  121 AKHARSLTDG GVRYFVSKH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle