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View Structure Prediction Details

Protein: gi|145335379, gi...
Organism: Arabidopsis thaliana
Length: 410 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145335379, gi....

Description E-value Query
Range
Subject
Range
POHS1_ARATH - Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1
551.0 [0..1] [348..1]
PHS1_MAIZE - Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays GN=PHS1 PE=1 SV=1
314.0 [0..22] [346..32]
gi|115468054, gi... - gi|125597220|gb|EAZ37000.1| hypothetical protein OsJ_020483 [Oryza sativa (japonica cultivar-group)]...
303.0 [0..22] [346..24]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSLTASNR RRNAEDSSEI YRWTIGFARF VHYPSSPSPH PVLKPLGKRE QYHSPHGTWL  60
   61 SASSSTVSLH IVDELNRSDV ILSVKLGQKV LEEHYISKLN FTWPQMSCVS GFPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGSRAIFVTY MDSANQIQKF ALRFSTCDAA LEFVEALKEK IKGLKEASTQ NQKNKTRCDV  60
   61 SFQSDYNPSD AIIPRATQKE PNMVRPLNSY VPEMLPRIVY EAQYQKSETR SEVSFQSDYN 120
  121 PSIEIFPRAT EEEPNMVRFF DSSVPEVLPR PEYEAGQALY PSQSTLNQIP SLPPSFTTLL 180
  181 SGCFPDSTLD AGQTTVKQNP DLKSQILKYM EDSSFQDMLQ KVERIIDEIG DRCVGSTIGR 240
  241 SSKIYIPLCF HNNCIHPFKD DCWCCLAAGT KKDWCWLEKD FPDAKELCMK TCTRKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle