YRC Public Data Repository - Protein Structure Prediction

Protein:	SPP2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPP2_SCHPO.

Description	E-value	Query Range	Subject Range
GPKOW - G patch domain and KOW motifs gi\|15811782 - ref\|NP_056513.2\| G patch domain and KOW motifs [Homo sapiens]	324.0	[0..65]	[381..29]
gi\|62089558 - gi\|62089558\|gb\|AAH92224.1\| Gpkow protein [Mus musculus]	309.0	[0..17]	[381..34]
gi\|149028450, gi... - gi\|157820365\|ref\|NP_001102851.1\| G patch domain and KOW motifs [Rattus norvegicus], gi\|149028450\|gb\|...	289.0	[0..65]	[381..27]
gi\|76659412 - gi\|76659412\|ref\|XP_886193.1\| PREDICTED: similar to G patch domain and KOW motifs-containing protein ...	281.0	[0..58]	[381..25]
gi\|74007394 - gi\|74007394\|ref\|XP_538033.2\| PREDICTED: similar to G patch domain and KOW motifs [Canis familiaris]	281.0	[0..65]	[381..29]
GPKOW_DANRE - G patch domain and KOW motifs-containing protein OS=Danio rerio GN=gpkow PE=2 SV=2 gi\|55742464 - ref\|NP_001007208.1\| T54 protein-like [Danio rerio]	268.0	[0..19]	[371..41]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKAVLEAF SDSEDEDEKK LKGPQLITGF SAEEGVHYQN ETIQRIHEKK RAPKIIHIAS  60
   61 DENWMEKRKA RFKKKETEVH EKPSQLPDSG LNYGLNIRVA SSSAADNEIV DWKANNSNEK 120
  121 AQNKIATNKE STDILPEEVQ LVLNDLNDDV KSANSANLQP ITTNVVNEKD AYRKDIDELP 180
  181 EPSNMKDYSE IPVEEFGAAM LRGM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWNGQLSSKD AFDVNQRPTF LGMGAKPVDS ELTELDIWKN PKKTMFLPVK PLESNSALNS  60
   61 QNEHTEVQKK SNSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [279-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNLTPSSELF RKRSRDNNLS RESSVSSKHL DYNSRNYNKR DRDPDRTKYR EYHSERRKQH  60
   61 RTDRYSDDYY QGRSYSYKKR SHRSDRYTER ENPDRSYRST RTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits