YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238136, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238136, gi|....

Description	E-value	Query Range	Subject Range
gi\|93354089, gi\|... - gi\|94310237\|ref\|YP_583447.1\| HyaD peptidase [Ralstonia metallidurans CH34], gi\|93354089\|gb\|ABF08178....	195.0	[0..2]	[176..20]
gi\|311538, gi\|628534 - pir\|\|S39401 hydrogenase maturation factor hupD [similarity] - Bradyrhizobium japonicum, gi\|311538\|em...	191.0	[0..2]	[164..9]
HUPD_BRAJA - Hydrogenase expression/formation protein hupD OS=Bradyrhizobium japonicum GN=hupD PE=3 SV=2 HUPD_BRADU - Hydrogenase expression/formation protein HupD OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / I...	187.0	[0..2]	[164..9]
gi\|67535661, gi\|... - gi\|67542971\|ref\|ZP_00420905.1\| Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase exp...	187.0	[0..3]	[176..17]
gi\|193066338, gi... - gi\|75255605\|ref\|ZP_00727389.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli E22], ... gi\|194429837, gi... - gi\|75208927\|ref\|ZP_00709200.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli B171],...	187.0	[0..2]	[177..5]
gi\|191166575, gi... - gi\|75230249\|ref\|ZP_00716746.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli B7A], ...	186.0	[0..2]	[177..5]
gi\|83368436, gi\|... - gi\|83368436\|ref\|ZP_00913299.1\| Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase exp...	186.0	[0..2]	[176..8]
gi\|75190042, gi\|... - gi\|75190042\|ref\|ZP_00703309.1\| COG0680: Ni,Fe-hydrogenase maturation factor [Escherichia coli E24377...	186.0	[0..2]	[177..5]
gi\|34483714 - gi\|34483714\|emb\|CAE10711.1\| HYDROGENASE EXPRESSION/FORMATION PROTEIN [Wolinella succinogenes] gi\|34557996 - gi\|34557996\|ref\|NP_907811.1\| hydrogenase expression/formation protein [Wolinella succinogenes DSM 17...	186.0	[0..1]	[178..1]
gi\|110804989, gi... - gi\|110804989\|ref\|YP_688509.1\| hydrogenase 1 maturation protease [Shigella flexneri 5 str. 8401], gi\|...	186.0	[0..2]	[177..5]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLVLGIGN IMFADEGLGV HLCKQLEKNY KFTHSEFTLD FVDGGTLALQ LSYIIARYDR  60
   61 LIVLDCIEAQ GASIGDVFFF PYDAMPNKIS WSGSAHEIEM LQTLQYMELA GDLPKTHILA 120
  121 CVPKRIEAMS FKLSDELIQG AKIMEKTLLD FLSKEGFAYE KIADFSLQEL ADISYKNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1cfzA
Description:	Hydrogenase maturating endopeptidase HybD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11092890710142	bayes_pls_golite062009
peptidase activity	0.52936925148529	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: