YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75816918, gi\|...
Organism:	Vibrio cholerae V52
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75816918, gi|....

Description	E-value	Query Range	Subject Range
gi\|124121803, gi... - gi\|153802675\|ref\|ZP_01957261.1\| MutT/nudix family protein [Vibrio cholerae MZO-3], gi\|124121803\|gb\|E... gi\|229347447, gi... - gi\|229515678\|ref\|ZP_04405137.1\| hypothetical protein VCB_003336 [Vibrio cholerae TMA 21], gi\|2293474... gi\|116218761, gi... - gi\|75817924\|ref\|ZP_00748176.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|229341512, gi... - gi\|229521414\|ref\|ZP_04410833.1\| hypothetical protein VIF_001948 [Vibrio cholerae TM 11079-80], gi\|22... tr\|A0A085PRJ4\|A0... - NUDIX domain protein OS=Vibrio cholerae GN=DN30_2612 PE=4 SV=1, MutT/nudix family protein OS=Vibrio ... gi\|254286601, gi... - gi\|254286601\|ref\|ZP_04961557.1\| MutT/nudix family protein [Vibrio cholerae AM-19226], gi\|197751934\|r... gi\|153212259, gi... - gi\|153212259\|ref\|ZP_01948047.1\| MutT/nudix family protein [Vibrio cholerae 1587], gi\|124116637\|gb\|EA... gi\|148874488, gi... - gi\|153830048\|ref\|ZP_01982715.1\| MutT/nudix family protein [Vibrio cholerae 623-39], gi\|148874488\|gb\|...	172.0	[0..1]	[204..1]
gi\|116216234, gi... - gi\|75823033\|ref\|ZP_00752570.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... tr\|D7H8D1\|D7H8D1... - MutT/nudix family protein OS=Vibrio cholerae RC385 GN=VCRC385_02003 PE=4 SV=1	172.0	[0..1]	[204..1]
gi\|46914015, gi\|... - gi\|54309577\|ref\|YP_130597.1\| MutT/nudix family protein [Photobacterium profundum SS9], gi\|46914015\|e...	155.0	[0..4]	[197..2]
gi\|90413084, gi\|... - gi\|90413084\|ref\|ZP_01221081.1\| Hypothetical MutT/nudix family protein [Photobacterium profundum 3TCK...	155.0	[0..4]	[197..2]
gi\|225853032, gi... - gi\|225853032\|ref\|YP_002733265.1\| NUDIX hydrolase [Brucella melitensis ATCC 23457], gi\|225641397\|gb\|A... gi\|225627994, gi... - gi\|225627994\|ref\|ZP_03786030.1\| MutT/nudix family protein [Brucella ceti str. Cudo], gi\|225617157\|gb... gi\|62290438, gi\|... - gi\|62290438\|ref\|YP_222231.1\| MutT/nudix family protein [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|254697884 - gi\|254697884\|ref\|ZP_05159712.1\| NUDIX hydrolase [Brucella abortus bv. 2 str. 86/8/59] gi\|254694229 - gi\|254694229\|ref\|ZP_05156057.1\| NUDIX hydrolase [Brucella abortus bv. 3 str. Tulya] gi\|254689740 - gi\|254689740\|ref\|ZP_05152994.1\| NUDIX hydrolase [Brucella abortus bv. 6 str. 870] gi\|237789244, gi... - gi\|237815946\|ref\|ZP_04594943.1\| MutT/nudix family protein [Brucella abortus str. 2308 A], gi\|2377892... gi\|254710591 - gi\|254710591\|ref\|ZP_05172402.1\| NUDIX hydrolase [Brucella pinnipedialis B2/94] gi\|254708221 - gi\|254708221\|ref\|ZP_05170049.1\| NUDIX hydrolase [Brucella pinnipedialis M163/99/10] gi\|254704807 - gi\|254704807\|ref\|ZP_05166635.1\| NUDIX hydrolase [Brucella suis bv. 3 str. 686] gi\|254702275 - gi\|254702275\|ref\|ZP_05164103.1\| NUDIX hydrolase [Brucella suis bv. 5 str. 513] gi\|254730775 - gi\|254730775\|ref\|ZP_05189353.1\| NUDIX hydrolase [Brucella abortus bv. 4 str. 292] gi\|189024668, gi... - gi\|189024668\|ref\|YP_001935436.1\| MutT/nudix family protein [Brucella abortus S19], gi\|189020240\|gb\|A... gi\|254717835 - gi\|254717835\|ref\|ZP_05179646.1\| NUDIX hydrolase [Brucella ceti M13/05/1] gi\|161619497, gi... - gi\|161619497\|ref\|YP_001593384.1\| NUDIX hydrolase [Brucella canis ATCC 23365], gi\|161336308\|gb\|ABX626... gi\|254714774 - gi\|254714774\|ref\|ZP_05176585.1\| NUDIX hydrolase [Brucella ceti M644/93/1]	152.0	[0..8]	[198..11]
gi\|25526325 - pir\|\|AH3309 phosphohydrolase (mutT/nudiX family protein) BMEI0462 [imported] - Brucella melitensis (... gi\|17982372, gi\|... - gi\|17986745\|ref\|NP_539379.1\| phosphohydrolase (MUTT/NUDIX family protein) [Brucella melitensis 16M],...	151.0	[0..8]	[198..11]
gi\|68529910, gi\|... - gi\|94309697\|ref\|YP_582907.1\| NUDIX hydrolase [Ralstonia metallidurans CH34], gi\|93353549\|gb\|ABF07638...	150.0	[0..7]	[199..47]
gi\|33566068 - gi\|33566068\|emb\|CAE36967.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596299 - gi\|33596299\|ref\|NP_883942.1\| hypothetical protein BPP1666 [Bordetella parapertussis 12822]	150.0	[0..4]	[200..57]
gi\|76803905 - gi\|76803905\|gb\|ABA55848.1\| guanylate cyclase [Vibrio sp. DAT722]	150.0	[0..4]	[200..3]
gi\|28806870 - gi\|28806870\|dbj\|BAC60141.1\| MutT/nudix family protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28898652, gi\|... - gi\|28898652\|ref\|NP_798257.1\| MutT/nudix family protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28... gi\|153839230, gi... - gi\|153839230\|ref\|ZP_01991897.1\| MutT/nudix family protein [Vibrio parahaemolyticus AQ3810], gi\|14974...	150.0	[0..4]	[198..3]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNISRHEFI QQFQLHLPAA YPQESLRRVA HLAPEKLRKA SVLIGVVERP QGLQVIMTKR  60
   61 AAHLRHHPGQ ISFPGGKYEE SDHSLQQTAK REAREEIGIP EEKIRIVGQL PELVTVSQFA 120
  121 VTPFLAFVES DYPIQLDHNE VDEVFEVPIS FLLDRKKIYS GTFQLKKHRH KLFALSYKQH 180
  181 FIWGMTAQII QSLQKQFINY NELV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.97790691270817	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.544115189438	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.54377405132398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: