YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167386, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167386, gi|....

Description	E-value	Query Range	Subject Range
gi\|25057508, gi\|... - gi\|25057508\|ref\|NP_739680.1\| NADH dehydrogenase subunit 4L [Diplacanthopoma brachysoma], gi\|25005560...	99.0	[0..1]	[97..1]
gi\|16266812, gi\|... - gi\|16357117\|ref\|NP_443484.1\| NADH dehydrogenase subunit 4L [Ijimaia dofleini], gi\|16266812\|dbj\|BAB70...	99.0	[0..1]	[97..1]
NU4LM_FORLA - NADH-ubiquinone oxidoreductase chain 4L OS=Formosania lacustris GN=MT-ND4L PE=3 SV=1	98.0	[0..1]	[97..1]
gi\|2829044 - gi\|2829044\|gb\|AAD10078.1\| NADH ubiquinone oxidoreductase subunit 4L [Xenocypris argentea]	98.0	[0..1]	[97..1]
gi\|16357088, gi\|... - gi\|16357088\|ref\|NP_443536.1\| NADH dehydrogenase subunit 4L [Cololabis saira], gi\|16267055\|dbj\|BAB702...	98.0	[0..1]	[97..1]
gi\|71658045, gi\|... - gi\|71658045\|ref\|YP_271997.1\| NADH dehydrogenase subunit 4L [Cobitis sinensis], gi\|44887484\|gb\|AAS480...	98.0	[0..1]	[97..1]
gi\|61971487, gi\|... - gi\|61971489\|gb\|AAX58131.1\| NADH dehydrogenase subunit 4L [Cyprinella gibbsi], gi\|61971487\|gb\|AAX5813...	98.0	[0..1]	[97..1]
gi\|108767361, gi... - gi\|108767361\|ref\|YP_636091.1\| NADH dehydrogenase subunit 4L [Chondrostoma lemmingii], gi\|105873620\|g...	98.0	[0..1]	[97..1]
gi\|88061947 - gi\|88061947\|gb\|ABD38952.1\| NADH dehydrogenase subunit 4L [Leiostomus xanthurus]	98.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKYFFVAI LMFVIGLVGI LKRQNLIMLF ISSEILLNSA NLALVAASKM HNDLNGQVFA  60
   61 LFIMGVAACE VAVGVALCVL WYRRKGTLEL KSLKEVEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.508638
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits