YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237929, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237929, gi|....

Description	E-value	Query Range	Subject Range
gi\|12722019, gi\|... - gi\|15603484\|ref\|NP_246558.1\| ribulose-phosphate 3-epimerase [Pasteurella multocida subsp. multocida ...	170.0	[0..4]	[200..16]
THIE_SYNY3 - Thiamine-phosphate synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=thiE PE=3 SV=1 gi\|7427960 - pir\|\|S74943 thiamine-phosphate diphosphorylase (EC 2.5.1.3) - Synechocystis sp. (strain PCC 6803) THIE_SYNY3 - Thiamine-phosphate pyrophosphorylase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=th...	169.0	[0..1]	[200..140]
gi\|48891748, gi\|... - gi\|71674938\|ref\|ZP_00672684.1\| Thiamine monophosphate synthase [Trichodesmium erythraeum IMS101], gi...	167.0	[0..1]	[200..146]
gi\|170718563, gi... - gi\|53728308\|ref\|ZP_00348123.1\| COG0036: Pentose-5-phosphate-3-epimerase [Haemophilus somnus 2336], g... gi\|23467805, gi\|... - gi\|23467805\|ref\|ZP_00123383.1\| COG0036: Pentose-5-phosphate-3-epimerase [Haemophilus somnus 129PT], ...	166.0	[0..4]	[200..1]
gi\|92885240 - gi\|92885240\|gb\|ABE87727.1\| Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase [Medicago...	166.0	[0..3]	[200..365]
gi\|67922607, gi\|... - gi\|67922607\|ref\|ZP_00516113.1\| Thiamine monophosphate synthase [Crocosphaera watsonii WH 8501], gi\|6...	165.0	[0..5]	[201..142]
gi\|68249166, gi\|... - gi\|68249166\|ref\|YP_248278.1\| ribulose-phosphate 3-epimerase [Haemophilus influenzae 86-028NP], gi\|68...	165.0	[0..4]	[200..11]
gi\|215704801, gi... - gi\|215768560\|dbj\|BAH00789.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|215704801\|dbj...	164.0	[0..3]	[200..177]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWDKKIIAIS DRKCVEIDFL KQIEKLAKAK VDAIVLREKD LSEFEYYDLA KEVLSICAKQ  60
   61 KVTCFLHFFD RECLKLGHRY FHAPLSLLRK EPKLTKYFHI LGTSVHSKEE LLEAMSYKVN 120
  121 YAFVGHIFES SCKMGLEPKG IDFLKSLLEF SQIPLYAIGG INAQNIENFK DINVVGVCMR 180
  181 EILMKEKDLK KYLLECRQNL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.09691
Match:	1xi3A
Description:	Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
thiamin-phosphate diphosphorylase activity	6.04450222340788	bayes_pls_golite062009
catalytic activity	2.31352397210218	bayes_pls_golite062009
phosphomethylpyrimidine kinase activity	2.16632642989285	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	1.16976945211093	bayes_pls_golite062009
transferase activity	1.16478613213801	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	0.63318404518052	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: