YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61362516, gi\|...
Organism:	synthetic construct
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61362516, gi|....

Description	E-value	Query Range	Subject Range
gi\|73971344 - gi\|73971344\|ref\|XP_866787.1\| PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3...	4.0E-72	[1..218]	[1..218]
gi\|225494, gi\|510 - gi\|510\|emb\|CAA28542.1\| unnamed protein product [Bos taurus], gi\|225494\|prf\|\|1304303B clathrin LCa	1.0E-68	[1..218]	[1..213]
gi\|30585415, gi\|... - gi\|60653991\|gb\|AAX29688.1\| clathrin light polypeptide [synthetic construct], gi\|30585415\|gb\|AAP36980...	2.0E-67	[1..218]	[1..218]
gi\|53733998 - gb\|AAH84012.1\| Unknown (protein for MGC:98180) [Xenopus laevis] gi\|122939192, gi... - gi\|74214691\|dbj\|BAE31185.1\| unnamed protein product [Mus musculus], gi\|74213812\|dbj\|BAE29342.1\| unna...	5.0E-66	[1..218]	[1..218]
CLTA - clathrin, light chain A gi\|208966052 - gi\|208966052\|dbj\|BAG73040.1\| clathrin, light chain [synthetic construct]	1.0E-65	[1..218]	[1..248]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELDPFGAP AGAPGGPALG NGVAGAGEED PAAAFLAQQE SEIAGIENDE AFAILDGGAP  60
   61 GPQPHGEPPG GPDAVDGVMN GEYYQESNGP TDSYAAISQV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRLQSEPESI RKWREEQMER LEALDANSRK QEAEWKEKAI KELEEWYARQ DEQLQKTKAN  60
   61 NRAAEEAFVN DIDESSPGTE WERVARLCDF NPKSSKQAKD VSRMRSVLIS LKQAPLVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.045757
Match:	1xi4J
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits